Engineering microbial communities Directory UMM :Data Elmu:jurnal:A:Applied Soil Ecology:Vol15.Issue2.Oct2000:

A.V. Sturz, J. Nowak Applied Soil Ecology 15 2000 183–190 185 organizing forces that govern such communities need to be determined.

3. A strategy for creating stable microbial communities

When considering the anthropogenic introduction of new-colonists ‘beneficial microorganisms’ into the root zone — through seed amendments or dur- ing seed-bed preparation — the potential for severe negative interactions with autochthonous microbial populations should be borne in mind Atlas, 1986. It is now appreciated that the microbiological pop- ulations of an ecosystem are able to interact with one another through the production and reception of signalling molecules. Such signalling molecules can subsequently influence gene expression, and thereby bacterial phenotype Salmond et al., 1995; Albus et al., 1997; Surette and Bassler, 1998. ‘Quo- rum sensing’ describes one such signalling system, whereby responses to bacterial population density are modulated through the accumulation of extracellular signalling molecules, that can regulate an assorted range of metabolic processes Swift et al., 1996. Similarly, the relationship between host and bacte- rial endophyte is not static. Communities of bacterial endophytes may not only be host specific, but also plant tissue sensitive, reacting and adapting at certain tissue sites and among certain tissue types within the host plant as it develops Sturz et al., 1999. The dy- namic nature of bacterial phenotype expression, in this case antibiotic secretion, may be being governed by a phenomenon analogous to ‘quorum sensing’ — which can also be influenced by environmental factors such as oxygen concentration Sitnikov et al., 1995. While positive interactions commensalism, mutu- alism, and synergism may enable some populations to function as a community within a habitat Rayner, 1997, negative interactions may result in the exclu- sion of microbial colonists from an established com- munity, or in a range of negative allelopathic events Sturz and Christie, 1995, 1996. In mature communities, positive interactions among autochthonous populations are usually better devel- oped than in newly established communities. The successful establishment of beneficial organisms will be influenced, to varying degrees, by the network of connections among species in a mature estab- lished ecosystem. In essence, the establishment of the ‘new-colonist’ population can be prejudiced by the dynamics of the ecosystem it is trying to invade, through a form of defensive mutualism Clay, 1988. Thus, one component of an approach designed to favour the successful assimilation of selected organ- isms into a rhizosphere, would be to introduce the ben- eficial microorganisms at the earliest possible stage in the metapopulation continuum Levins, 1976; Hast- ings and Harrison, 1994. As endophytic bacteria have been recovered from the ovules, seeds and tubers of a variety of plants Mundt and Hinkle, 1976; Holland and Polacco, 1994, the creation of selected commu- nities of beneficial bacterial endophytes within these germinal structures would form one of the earliest pio- neer colonization events possible. Initially, such com- munities may be relatively stable and could compete with native soil bacteria once plant propagules had been planted.

4. Engineering microbial communities

The ability to successfully manipulate endophytic bacteria in agricultural production systems will depend upon the ability to select, incorporate and maintain beneficial microbial populations in the field. How- ever, the reciprocity among populations of exo- and endorhizal origin has not been fully explored. If the composition and function of endophytic populations is determined by co-existing rhizosphere populations, then altering the exoroot community may be unde- sirable; especially where associations of co-operating species occupy a single niche that could not be col- onized by either partner population alone Henry, 1966. A number of strategies may enable the early establishment of selected beneficial microbial popula- tions within the host and in the surrounding field soil. Biotization. One of the more elegant ways to in- troduce selections of endophytes into the host plant, at an early stage, would be through tissue culture Varga et al., 1994; Nowak, 1998. Biotization, in the current context, may be defined as the metabolic re- sponse of in vitro grown plant material to microbial inoculants which promote developmental and physi- ological changes that enhance biotic and abiotic stress resistance in subsequent plant progeny. Such systems 186 A.V. Sturz, J. Nowak Applied Soil Ecology 15 2000 183–190 allow for mutual adaptation between the host plant and the introduced bacteria Nowak et al., 1999; Sturz and Nowak, unpublished data. The benefits of an established, thriving and stable microbial endoplant community can include disease resistance, through the de novo synthesis of structural compounds and fungitoxic metabolites at sites of attempted fungal penetration Benhamou et al., 1996, the induction and expression of general molecular-based plant im- munity Richards, 1997; Sticher et al., 1997; Nowak et al., 1998, or the simple exclusion of other organisms phytopathogens or colonists by niche competition. Bacterized plantlets not only grow faster than un- bacterized plantlets Chanway, 1997; Bensalim et al., 1998, but they are sturdier, have a better developed root system Nowak, 1998 and a significantly greater capacity to withstand adverse biotic stresses i.e., drought and low level disease pressures Stewart, 1997; Sharma and Nowak, 1998. In potato culture, endophyte bacteria can be translocated to successive generations of potato plants during multiplication, either through stem explants Frommel et al., 1991, microtubers Nowak and Sturz, unpublished or in seeds Varga, personal communication. Of recent in- terest to sustainable agriculture systems has been the realization that stable, beneficial associations between plant species and diazotrophic bacteria Varga et al., 1994; Preininger et al., 1997 under conditions of low soil nitrogen Gyurján et al., 1995 may be used to improve plant growth and crop productivity. Crop production systems. Crop rotations and tillage management have been shown to influence specific soil microbial populations see reviews by Alabou- vette et al., 1996; Sturz et al., 1997. Selecting crop production systems which sustain and encourage the development of consortia of beneficial rhizobacterial populations will be crucial, if the cumulative bene- fits of microbial synergies are to be harnessed. It is likely that such benefits will be small in any given season, and their incremental value only recognized over time. In this respect, the iatrogenic effects be- tween agrichemicals and non-target exo- and endo- root microflora bears closer examination Ingham, 1985; Bollen, 1993, as long-term applications of crop protection chemicals may adversely affect soil fertility by reducing the quantity and quality of bene- ficial rhizobacteria populations Sturz and Kimpinski, 1999. Cultivar selection. It is generally acknowledged that rhizobacterial populations can be manipulated, in the short term, through plant species selection Neal et al., 1970; Grayston et al., 1998. Root exudates can determine, to a great extent, which organisms will re- side in the rhizoplane Cook and Baker, 1983; Kunc and Macura, 1988. Rhizobacteria can, themselves, spur a root exudation response in plants Bowen and Rovira, 1976; Bolton et al., 1993 that is species spe- cific Chanway et al., 1988; Merharg and Killham, 1995. Such close interactions have prompted specu- lation that rhizobacteria and plants have co-evolved; plants encouraging the establishment of specific and beneficial rhizospheres through the selective exuda- tion of specific root exudates Bolton et al., 1993. This close relationship between plants and rhizobac- teria is also found to extend to endophytic bacteria. In some cases complementary crops grown in rotation can share 70 of the same species of endophytic bac- teria Sturz et al., 1998. Such associations between different crop species can be cultivar specific. Thus, certain cultivars of clover can foster the development of rhizo- and endophytic bacteria which favour the growth and development of specific cultivars of pota- toes Sturz and Christie, 1998. Genetic modification. Altering the genetic make-up of plants to manipulate both internal and external bacterial populations offers the possibility of creat- ing preferred rhizosphere communities O’Connell et al., 1996. Other than research into rhizobia–legume interactions, most selection criteria in plant breeding programs have not considered which components of superior progeny performance are attributable to the inherited ability of plants to respond to, modify or create communities of beneficial bacteria in their rhizospheres. Even so, it is likely that there has been some collateral selection for host-endophyte interac- tive ability. To capitalize further on such associations, breeding programs could proceed in a number of directions. Im- proved plant performance, based on superior interac- tions between host plants and their endophytes, could result in yield benefits; either directly, or indirectly through a healthier, vigorous and more stress resistant crop. Alternatively, selections could be based upon host responsiveness to specific beneficial bacteria, which would then become a part of any bacterization step during multiplication, e.g. interactions between A.V. Sturz, J. Nowak Applied Soil Ecology 15 2000 183–190 187 temperature, bacterization and potato genotype indi- cate the importance of clonal variations for utilization of beneficial microorganisms in potato production under heat stress conditions Bensalim et al., 1998. Several strategies have already been proposed to optimize endophyte nitrogen fixation in non-legume crops, including: i altering the receptivity of the host plant to colonization by nitrogen-fixing bacte- ria through nodule induction de Bruijn et al., 1995; Christiansen-Weniger, 1998; ii exploiting stable plant–diazotrophic endophyte bacteria associations able to fix nitrogen endophytically Reddy and Ladha, 1995; Kennedy et al., 1997; Stoltzfus et al., 1997; Swensen and Mullin, 1997 and iii through the ge- netic alteration of selected endophytic bacteria, or direct incorporation of nitrogen-fixing genes Dixon et al., 1997; Gough et al., 1997. The reader is referred to reviews in Ladha et al. 1997. Seed treatments. Judging by past experience, ap- plying bacterial seed treatments prior to planting does not guarantee the establishment of a beneficial endo- or exorhizal flora Frommel et al., 1993 nor does it always enhance yield Volkmar and Bremer, 1998. Introductions of non-local microfloras must compete with established microbial communities in the soil, the rhizosphere and within the plant. Both true seeds and plants which are propagated vegetatively are likely to carry enduring consortia of adapted endo- phytes, a portion of which will be transferred to the subsequent progeny. Niche specialization will ensure that local communities are better positioned to col- onize and retain niche dominance at the expense of later introduced species. Our feeling, at the present time, is that seed treatments are best suited to aug- menting established consortia of microbial organisms fungal, bacterial and mycorrhizal created as part of a long-term strategy of harmonized crop cultivar selection and management practices.

5. Conclusions