Materials and methods Directory UMM :Data Elmu:jurnal:A:Antiviral Research:Vol48.Issue1.2000:

translation of the picornavirus RNA or genome replication for a review, see Carrasco, 1994. In contrast, only a very small number of compounds have been described that inhibits the poliovirus assembly or morphogenesis. Among them are 2- amino-4,6-dichloropyrimidine Py 11 and 2- amino-5-2-sulfamoylphenyl-1,3,4-thiadiazole G 413. Py 11 reversibly prevents the assembly of the P1 proteins the precursor of the structural proteins into 14S particles La Colla et al., 1976, 1977. G 413 probably prevents the assembly by interacting directly with the structural proteins Bonina et al., 1982. Recently, it has been shown that 5-3,4- dichlorophenyl methylhydantoin referred to here as hydantoin possess anti-picornavirus activity, specifically against the three serotypes of po- liovirus, several coxsackieviruses and a less pro- nounced activity against human rhinoviruses Gerzon et al., 1974; Vance et al., 1997. The mode of action of hydantoin against poliovirus the best-studied model virus of the picor- naviruses has been studied in detail. It was shown, that hydantoin is an inhibitor of the mor- phogenesis of the virus Vance et al., 1997. Poliovirus morphogenesis can be described as a stepwise assembly process Putnak and Phillips, 1981; Hellen and Wimmer, 1992. In this cascade of events, hydantoin affects at least one of these assembly steps. In hydantoin-treated cells a new putative assembly intermediate 110S could be detected. As this intermediate has properties con- sistent with that of a packaging intermediate, it has been suggested that hydantoin inhibits the encapsidation of viral RNA Vance et al., 1997. Molla et al. 1991, 1993 has developed a cell- free system for de novo synthesis of infectious poliovirus. This cell-free system is an ideal tool to study the assembly of poliovirus. The cell-free system consists of an extract of uninfected HeLa cells and is programmed with viral RNA. Conse- quently, there is direct access to the replication machinery, unhampered by intact cellular mem- branes. As no extraction procedure is required for the detection of the assembly intermediates, the isolation and characterisation of such particles is relatively easy. Moreover, assembly intermedi- ates can be studied without membrane passage. Making use of these properties, we have studied the mechanism of action of hydantoin in this cell-free system.

2. Materials and methods

2 . 1 . Cells and 6irus HeLa S-3 cells in suspension were grown in SMEM medium, supplemented with 0.03 glu- tamine and 5 calf serum. Purified type 1 Mahoney poliovirus was used throughout the experiments. All virus purification procedures were as previously described Everaert et al., 1989. 2 . 2 . Drug solutions 5-3,4-dichlorophenyl methylhydantoin was kindly obtained from Lilly Research Laborato- ries. Stock solutions 10 mgml of the product were made in dimethyl sulfoxide. 2 . 3 . Preparation of 6RNA The vRNA was extracted from purified po- liovirus Mahoney strain using an RNA isolation kit PUREscript, BIOzym. In a sterile tube, 1250 m l cell lysis solution PUREscript, BIOzym was added to 500 ml purified virus 100 mg100 ml, see Section 2 and mixed by vortexing for 5 min. Afterwards, 500 ml protein-DNA precipitation so- lution PUREscript, BIOzym was added and mixed by gently inverting the tube 10 times. The mixture was cooled on ice for 5 min and cen- trifuged for 15 min at 13 000 × g max and 4°C in a centrikon A8.24 rotor. The RNA containing su- pernatant was collected and centrifuged for 15 min at 13 000 × g max and 4°C in a centrikon A8.24 rotor. To the supernatant, 1 ml of a 20 mgml glycogen solution and 1500 ml of iso- propanol were added. The tube was gently in- verted 50 times and centrifuged for 15 min at 13 000 × g max and 4°C in a centrikon A8.24 rotor. The supernatant was poured off and the vRNA pellet was washed with 1500 ml 70 ethanol. Finally, the vRNA was collected by centrifuga- tion; air dried and resolved in 50 ml diethyl py- rocarbonate treated water RNase free water. The concentration and the A 260 A 280 ratio of the vRNA preparations were spectrophotometrically measured and the ratio was found to be 1.9, as expected for pure vRNA. The vRNA was stored at − 80°C. Before use, the integrity of the vRNA was determined by agarose gel elec- trophoresis 0.8. 2 . 4 . Preparation of cytoplasmic HeLa extract Cytoplasmic HeLa extract HeLa S-10 was prepared as previously described Molla et al., 1991, 1993; Cuconati et al., 1998. Briefly, HeLa cells were harvested en washed with HBSS buffer. Afterwards, the cells were resuspended in a hypotonic buffer 10 mM K-HEPES, pH 7.4, 10 mM potassium acetate, 1.5 mM magnesium acetate and 2.5 mM dithiothreitol, cooled on ice for 10 min and lysed with a Dounce Ho- mogenizer. The degree of lysis was determined visually by phase-contrast microscopy. Cell de- bris and nuclei were removed by centrifugation and the supernatant was dialysed against 2 l of dialysis buffer 10 mM K-HEPES, pH 7.4, 90 mM potassium acetate, 1.5 mM magnesium ace- tate and 2.5 mM DTT. The dialysed lysate was centrifuged and 50 glycerol was added to a final concentration of 10. After treatment with a micrococcal nuclease to remove the endoge- nous mRNA’s, the cytoplasmic HeLa lysate was aliquoted and stored by − 80°C. 2 . 5 . Cell-free synthesis of polio6irus The preparations of the cell-free systems were carried out as described previously Molla et al., 1991, 1993; Cuconati et al., 1998 with slight modifications. Rabbit Reticulocyte Lysate 10 Promega and pirodavir 10 mgml, a stabiliser of the viral capsid synthesised by the Janssen Research Foundation Rombaut and Boeye´, 1991; Rom- baut et al., 1994, was added to each cell-free system Verlinden et al., in preparation. These additives enhanced the efficiency of the cell-free system. The final volume of each cell-free system was 25 ml, including 17.5 ml mastermix contain- ing 55 cytoplasmic HeLa lysate, 1.5 mM ATP, 296.5 mM GTP, 284 mM CTP and UTP, 14.8 mM creatine phosphate, 37 m gml creatine phophokinase, 28 mM K-HEPES pH 7.4, 37 mg ml calf liver tRNA, 1.85 amino acid mix mi- nus methionine, 370 mM spermidine, 545 mM magnesium acetate, 1.31 mM magnesium chlo- ride, 159 mM potassium acetate, 88 mCi tran 35 S- label™, 1 ml 250 mgml pirodavir solution, 2.5 m l Rabbit Reticulocyte lysate and 4 ml DEPC treated water, vRNA and other reagents. Incu- bation at 34°C for 15 h was followed by an RNase treatment. 2 . 6 . Analysis of labelled proteins by sodium dodecyl sulfate polyacrylamide gel electrophoresis SDS-PAGE The SDS-PAGE was essentially as described by Laemmli 1970 with the following modifica- tions. After denaturation, the proteins were analysed by SDS polyacrylamide gelelec- trophoresis in 12.5 slabgels 0.1 SDS. Gels were fixed in an acetic acid – methanol – water 104545 solution, fluorographed with Amplify Amersham, dried and exposed to BioMax MR-1 film Kodak at − 80°C. 2 . 7 . Analysis of assembly intermediates by sucrose gradient ultracentrifugation In each sample, free 35 S-methionine was re- moved by dialysis. For the analysis of the pro- capsids 74S and the virus 160S, the dialysed samples were layered onto a 15 – 30 sucrose gradient in PBS buffer 137 mM NaCl; 2.7 mM KCl; 8.1 mM Na 2 HPO 4 · 12H 2 O; 1.4 mM NaH 2 PO 4 · H 2 O pH 7.4 and centrifuged for 2 h 15 min at 180 000 × g av and 4°C in a centrikon TST 41.14 rotor. For the analysis of the 5S and 14S particles, dialysed samples were layered onto a 5 – 20 sucrose gradient in PBS buffer and centrifuged for 17 h at 55 000 × g av and 4°C in a MSE SW 30.3 rotor. After centrifuga- tion, 400 ml fractions were collected for analysis of the radioactivity. 2 . 8 . Plaque assay Human Embryonal Kidney HEK cells in monolayer were grown in 55 mm diameter petri dishes. Serial dilutions of each sample were pre- pared in SMEM medium. From each dilution, 250 ml was added to a petri dish. After 30 min at room temperature, 5 ml of a first overlay MEM medium, supplemented with 1.1 agar and 10 calfserum was added. After the petri dishes were incubated for 2 days at 37°C, the HEK cells were fixed with 5 ml of 10 formaldehyde for 2 h at room temperature. The first overlay was removed and the cells were stained with a crystal violet solution 0.2 crystal violet, 2 ethanol, and 10 formaldehyde in water for 1 h. The cells were washed with water and the plaques were counted.

3. Results