Identifying Special Model Characteristics Using ANOVA

Two-Dimensional Probabilistic Risk Assessment Model 1525 Table VIII. Summary of the ANOVA Results for 200 Bootstrap Simulations for F Value Statistics 95 Range Mean Probability Frequency c Mean of Factor a F Value Range SD Mean b Rank Rank Temp1 1445 873, 2040 0.21 100 2.9 2–4 Temp2 2.7 0.3, 7.8 0.83 33 10.9 10–13 Temp3 1130 650, 1670 0.32 100 3.7 2–4 Time1 1550 1275, 1820 0.10 100 2.5 2–4 Time2 0.7 0.0, 3.6 1.75 2 12.5 10–13 Time3 6060 5250, 6860 0.05 100 1.0 1 d MD 29 14, 45 0.41 100 8.9 8–9 LP1 273 236, 315 0.07 100 5.8 5–6 LP2 1.7 0.3, 4.3 0.68 22 11.4 10–13 LP3 325 295, 379 0.07 100 5.0 5–6 GT1 75 52, 97 0.26 100 7.0 7–8 GT2 1.9 0.3, 5.3 0.70 25 11.3 10–13 GT3 43 27, 55 0.29 100 8.1 7–9 Temp1 × Time1 1920 1660, 2150 0.07 100 Temp2 × Time2 0.7 0.3, 3.5 1.85 2 Temp3 × Time3 3605 3270, 4060 0.06 100 a The abbreviations used for factors in this table are the same as those defined in Table I. b The ratio of standard deviation SD to mean F values for each factor also referred to as coefficient of variation. c The percentage of the bootstrap simulations for which the F values were statistically significant. d Time3 consistently had rank 1 in bootstrap simulations. was specific to the example provided here and should not be used to make general quantitative judgments regarding differences between F values obtained with different sample sizes or models. However, the tech- nique used here can be applied to other case studies. The case study results suggest that the model output has similar sensitivity to two or more factors if they have similar F values. 4.3.4. Summary of the Results for the Comingled Analysis of Variability and Uncertainty Key insights and findings based on the comingled analysis of variability and uncertainty include: r Comingled analysis typically provided differ- ent results with respect to rank of impor- tant inputs compared to the two-dimensional analysis. However, both probabilistic ap- proaches identified similar groups of inputs with comparable importance. r Similar to the two-dimensional case, the two correlation-based methods failed to provide the same insights with respect to identifica- tion of the most important inputs compared to ANOVA. r In order to have statistically significantly differ- ent ranks, the two factors should have F values that differ at least by 60 for the conditions of the case study.

4.4. Identifying Special Model Characteristics Using ANOVA

ANOVA provides insight regarding special model characteristics such as nonlinearity, thresholds and saturation points, and interactions by compari- son of mean output values at different factor levels. Table IX summarizes an example in which a set of contrasts was used to infer an interaction effect be- tween storage temperature and storage time at Stage 3 and possible saturation points. When storage tem- perature in Stage 3 was at the first level i.e., between 7.5 ◦ C and 11 ◦ C, storage time influenced growth of E. coli in ground beef until the tenth day, since sta- tistically significant contrasts were estimated for the difference in pathogen growth for consecutive days through the tenth. After the tenth day there was no significant difference in the estimated growth, indicat- ing that maximum population density was achieved by the tenth day. When storage temperature was at the second level i.e., between 11 ◦ C and 14.5 ◦ C, the 1526 Mokhtari and Frey Table IX. Evaluation of ANOVA Contrasts for the Growth Estimation Regarding the Interactions Between Storage Temperature and Storage Time at Stage 3 Contrast Estimate a F Value Pr F Significant b T [7.5–11 ◦ C], Time 1st and 2nd days 0.005 112 0.0001 Yes T [7.5–11 ◦ C], Time 2nd and 3rd days 0.026 1280 0.0001 Yes T [7.5–11 ◦ C], Time 3rd and 4th days 0.049 1720 0.0001 Yes T [7.5–11 ◦ C], Time 4th and 5th days 0.069 1280 0.0001 Yes T [7.5–11 ◦ C], Time 5th and 6th days 0.074 610 0.0001 Yes T [7.5–11 ◦ C], Time 6th and 7th days 0.103 455 0.0001 Yes T [7.5–11 ◦ C], Time 7th and 8th days 0.042 30.8 0.0001 Yes T [7.5–11 ◦ C], Time 8th and 9th days 0.031 6.8 0.008 Yes T [7.5–11 ◦ C], Time 9th and 10th days 0.108 38.8 0.0001 Yes T [7.5–11 ◦ C], Time 10th and 11th days —— 0.16 0.8 No T [11–14.5 ◦ C], Time 1st and 2nd days 0.116 4060 0.0001 Yes T [11–14.5 ◦ C], Time 2nd and 3rd days 0.211 5290 0.0001 Yes T [11–14.5 ◦ C], Time 3rd and 4th days 0.218 2170 0.0001 Yes T [11–14.5 ◦ C], Time 4th and 5th days 0.119 240 0.0001 Yes T [11–14.5 ◦ C], Time 5th and 6th days 0.087 48.4 0.0001 Yes T [11–14.5 ◦ C], Time 6th and 7th days —— 0.9 0.6 No T [18–21.5 ◦ C], Time 1st and 2nd days 0.55 2630 0.0001 Yes T [18–21.5 ◦ C], Time 2nd and 3rd days —– 0.1 0.4 No T [21.5–25 ◦ C], Time 1st and 2nd days 0.503 6270 0.0001 Yes T [21.5–25 ◦ C], Time 2nd and 3rd days —– 2.4 0.09 No a The Estimate column represents the estimate of the difference in the growth of the E. coli organisms in two consecutive days. b Contrasts with p values less than 0.05 are statistically significant. contrasts indicated that maximum population den- sity was reached in only 5 days. When the storage temperature increased to the third, fourth, and fifth levels, maximum population density was reached in 4, 3, and 2 days, respectively. This pattern indicated an interaction effect between storage time and tem- perature and the corresponding saturation points for growth. Proper definition of factor levels for storage time or storage temperature can help identify thresholds with respect to these factors, which can be directly used as CLs in risk management recommendations. For example, knowing that growth is zero or negligible in the beginning of the storage process, one may look for two consecutive time intervals in which growth starts to show a statistically significant increase, which indicates a threshold. Using the inferred threshold as a recommended storage time can ensure prevention of growth of the E. coli O157:H7 organisms in ground beef servings.

4.5. Verification of the ANOVA Results