Filogenetika Kemenyan Toba (Styrax sumatrana) Berdasarkan Sekuen DNA Kloroplas trnL-trnF
DAFTAR PUSTAKA
Ardiana, D.W. 2009. Teknik isolasi DNA genom tanaman pepaya dan jeruk
dengan menggunakan modifikasi bufer CTAB. Jurnal Pertanian 14 (1):1216.
Aritonang, K.V., Siregar, I.Z., Yunanto, T. 2007. Manual Analisis Genetik
Tanaman Hutan di Laboratorium Silvikultur Fakultas Kehutanan Institut
Pertanian Bogor. Laboratorium Silvikultur Fakultas Kehutanan Institut
Pertanian Bogor.
Bagali, P. G., Prabhu, P. D. A. H., Raghavendra, K., Bagali, P. G., Hittalmani, S.,
Vadivelu, J. S. 2010. Application of molecular markers in plant tissue
culture. Asia-Pacific Journal of Molecular Biology and Biotechnology 18
(1):85-87.
Burkil, I.H. 1935. A Dictionary of The Economic Product od Tree Malay
Peninsula. Published of Behalf of Government of The Strait Settlement
and Federated malay States. (Vol II (1-Z) London.
Dharmayanti, I. 2011. Filogenetika molekuler: metode taksonomi organisme
berdasarkan sejarah evolusi. WARTAZOA Vol. 21 No. 1.
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using
bootstrap. Evolution 39:783-791.
Finkeldey, R, Hattemer, H.H. 2006. Tropical Forest Genetics. Institute of Forest
Genetic and Forest Tree Breeding. Göttingen University.
Frankham, R., Ballou, J. D., Briscoe, D. A., Mclnnes, K. H. 2010. Introduction to
Conservation Genetics. 2nd edition. Cambridge : Cambridge University
Press. ISBN : 978-0-521-70271-3. 618 p.
Guzmán B, Vargas P. 2005. Historical biogeography and character evolution
of Cistaceae (Malvales) based on analysis of plastid rbcL and trnL-trnF
sequences. Mol. Phylogenet. Evol. 37:644-660.
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor
and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41:
95-98.
Hamrick J.L. and J.W.M. Godt. 1990. Allozym diversity in plant species. In
Brown A.H.D., M.T
Universitas Sumatera Utara
Hendra, Pramana Y., Felicia Z. 2013. Genetika populasiCollocalia fuchiphaga di
Riau menggunakan mikrosatelit.Fakultas Teknobiologi, Universitas Atma
Jaya Yogyakarta.
Henuhili, V. 2008. Genetika dan Evolusi. Jurdik Biologi. Fakultas Matematika
Dan Ilmu Pengetahuan Alam. Universitas Negeri Yogyakarta
Heyne, K. 1987. Styraceae. Tumbuhan Berguna Indonesia Jilid III.Badan Litbang
Kehutanan Jakarta. Hal 1601 – 1609.
Hidayat, T., Yukawa, T., Ito, M. 2005. Molecular phylogenetics of subtribe
Aeridinae (Orchidaceae): insights from plastid matK and nuclear
ribosomal ITS sequences. Journal of Plant Research 118(4):84-271.
Holt, S. D. S., Horová, L., Bureš, P., Janeček, J., Černoch, V. 2005. The trnL-F
plastid DNA characters of three Poa pratensis (Kentucky Bluegrass)
varieties. Plant, Soil and Environment 51 (2):94-99.
Hutapea, J.R. 1994. Inventaris Tanaman Obat Indonesia. Edisi Ketiga. Jakarta.
Departemen Kesehatan RI. Hal 279.
Irawan, P.D., Tallei, T., Kolondam, B. 2016. Analisis sekuens dan filogenetik
beberapa tumbuhan syzygium (Myrtaceae) di Sulawesi Utara berdasarkan
gen matK.
Jayusman. 2014. Mengenal Pohon Kemenyan(Styrax spp.) Jenis dengan
Spektrum Pemanfaatan Luas yang Belum Dioptimalkan. Institut Pertanian
Bogor Press. Bogor.
Kimura, M. 1980. A simple methode for estimating evolutionary rates of base
substitutions through comparative studies of nucleotide sequences. J Mol
Evol 16:111-120.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A.,
McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R.,
Thompson, J. D., Gibson, T. J., Higgins, D. G. 2007. ClustalW and
ClustalX version 2. Bioinformatics 23 (21):2947-2948.
Lestari, W.S. (2014).Molecular phylogeny of maidenhair fern genus Adiantum
(Pteridaceae) from Lesser Sunda islands Indonesia based on rbcl gene and
trnl-f (Thesis). Program Pascasarjana Universitas Udayana.
Mirabella, F.M. 2011. Pendekatan Pohon dalam Filogenetik. Program Studi
Teknik Informatika. Institut Teknologi Bandung.
Universitas Sumatera Utara
Mondini, L., Noorani, A., Pagnotta, M. A. 2009. Review: assessing plant genetic
diversity by molecular tools. Diversity 1:19-35. DOI : 10.3390/d1010019.
Oetomo, M.S. 1974. Styrax benzoine dryand. Universitas Sumatera Utara. Medan.
Pirie, M.D., Vargas, M.P.B., Bottermans, M., Bakker, F.T., Chatrou, L.W. 2007.
Ancient paralogy in the cpDNA trnL-F region in Annonaceae:
implications for plant molecular systematics.Am J Bot 94:1003-1016.
Provan, J., Soranzo, N., Wilson, N.J., Goldstein, D.B., Powell, W. 1999. A low
mutation rate for chloroplast microsatellites. Genetics 153(2):943-7.
Pryer, K. M., Smith, A. R., Skog, J. E. 1995. Phylogenetic relationships of extant
ferns based on evidence from morphology and rbcL sequences. American
Fern Journal 85 (4):205-282.
Rajagukguk, K. 2009. Analisis Faktor Penyebab penurunan Intensitas
PengelolaanHutan Kemenyan, Studi Kasus: Hutan Kemenyan di Desa
Tangga BatuBarat, Kecamatan Tampahan, Kabupaten Tobasa. Unversitas
SumateraUtara Press. Medan.
Sauer, P., Muller, J. Kang. 1998. Quantitation DNA. Qiagen News. Vol. 2: 23-26.
Settani, L. Valmorri, S., Sinderen, D., Suzzi, G., Paparella, a., Corsetti, A. 2006.
Combination of multiplex PCR and PCR-denaturing gradient gel
electrophoresis
for
monitoring
common
sourdough-associated
Lactobacillus species. Aplication Environ Microbiology 72(5): 3793-3796.
Silalahi, J, dkk. (2013). Buku Kecil: Kemenyan Getah Berharga Tano Batak.
Balai Penelitian Kehutanan Aek Nauli. Parapat.
Simpson, M.G. 2006. Plant Systematic. California: Elsevier Academic press.
Siregar, M. 2001. Analisis Kesejahteraan Petani Kemenyan Sebagai Komoditi
Unggulan di Kabupaten Tapanuli Utara (Tesis). Program Pasca Sarjana
Universitas Sumatera Utara. Medan
Small, R. L., Cronn, R. C., Wendel, J. F. 2004. L. A. S. Johnson review No. 2: use
of nuclear genes for phylogeny reconstruction in plants. Australian
Systematic Botany 17:145-170.
Snustad, D Peter , Michael J. Simmons. 2003. Principles of Genetics.3rd ed. John
Wiley and Sons, Inc, New York: 840 hlm.
Soltis, D. E. and Soltis, P. S. 1998. Choosing an approach and an appropriate
gene for phylogenetic analysis. In: Soltis, D. E., Soltis, P. S., Doyle, J. J.,
Universitas Sumatera Utara
editors. Molecular Systematics of Plants II: DNA Sequencing.Netherlands:
Kluwer Academic Publishers. ISBN : 0-412-11131-4. p. 1-42.
Steenis, V. 1953. Styracaceae. Flora Malesiana Ser. I, Vol.42.
Su, H et al. 2003. The Great Wall of China: a physical barrier to gene
flow?.Heredity, Volume 9 Pages 212-219.
Taberlet, P., Gielly, L., Pautou, G., J. Bouvet. 1991. Universal primers for
amplification of three non-coding regions of chloroplast DNA. Plant
Molecular Biology 17:1105-1109.
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S. 2011.
MEGA5: Molecular Evolutionary Genetics Analysis using Maximum
Likelihood, Evolutionary Distance, and Maximum Parsimony Methods.
Molecular Biology and Evolution 28 (10):2731-2739. DOI :
10.1093/molbev/msr121.
Tjitrosoepomo, G. 1994. Taksonomi Tumbuhan Obat-Obatan. Cetakan I. Gajah
Mada University Press. Yogyakarta.
Tsai, L., Yu, Y., Hsieh, H., Wang, J., Linacre, A., Lee, J. C. 2006. Species
identification using sequences of the trnL intron and the trnL-trnF IGS of
chloroplast genome among popular plants in Taiwan. Forensic
ScienceInternational 164:193-200. DOI : 10.1016/j.forsciint.2006.01.007.
TürktaşM., Meral A., Erdal K., et al. 2012. Molecular characterization of
phylogeneticrelationships in Fritillaria species inferred from chloroplast
trnL-trnF sequences.TÜBİTAK Marmara Research Center, Genetic
Engineering and Biotechnology Institute, Gebze, Kocaeli. Turkey.
Ubaidillah, R., Sutrisno, H. 2009. Pengantar Biosistemik: Teori dan Praktik.
Jakarta: Lipi Press.
Universitas Sumatera Utara
Ardiana, D.W. 2009. Teknik isolasi DNA genom tanaman pepaya dan jeruk
dengan menggunakan modifikasi bufer CTAB. Jurnal Pertanian 14 (1):1216.
Aritonang, K.V., Siregar, I.Z., Yunanto, T. 2007. Manual Analisis Genetik
Tanaman Hutan di Laboratorium Silvikultur Fakultas Kehutanan Institut
Pertanian Bogor. Laboratorium Silvikultur Fakultas Kehutanan Institut
Pertanian Bogor.
Bagali, P. G., Prabhu, P. D. A. H., Raghavendra, K., Bagali, P. G., Hittalmani, S.,
Vadivelu, J. S. 2010. Application of molecular markers in plant tissue
culture. Asia-Pacific Journal of Molecular Biology and Biotechnology 18
(1):85-87.
Burkil, I.H. 1935. A Dictionary of The Economic Product od Tree Malay
Peninsula. Published of Behalf of Government of The Strait Settlement
and Federated malay States. (Vol II (1-Z) London.
Dharmayanti, I. 2011. Filogenetika molekuler: metode taksonomi organisme
berdasarkan sejarah evolusi. WARTAZOA Vol. 21 No. 1.
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using
bootstrap. Evolution 39:783-791.
Finkeldey, R, Hattemer, H.H. 2006. Tropical Forest Genetics. Institute of Forest
Genetic and Forest Tree Breeding. Göttingen University.
Frankham, R., Ballou, J. D., Briscoe, D. A., Mclnnes, K. H. 2010. Introduction to
Conservation Genetics. 2nd edition. Cambridge : Cambridge University
Press. ISBN : 978-0-521-70271-3. 618 p.
Guzmán B, Vargas P. 2005. Historical biogeography and character evolution
of Cistaceae (Malvales) based on analysis of plastid rbcL and trnL-trnF
sequences. Mol. Phylogenet. Evol. 37:644-660.
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor
and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41:
95-98.
Hamrick J.L. and J.W.M. Godt. 1990. Allozym diversity in plant species. In
Brown A.H.D., M.T
Universitas Sumatera Utara
Hendra, Pramana Y., Felicia Z. 2013. Genetika populasiCollocalia fuchiphaga di
Riau menggunakan mikrosatelit.Fakultas Teknobiologi, Universitas Atma
Jaya Yogyakarta.
Henuhili, V. 2008. Genetika dan Evolusi. Jurdik Biologi. Fakultas Matematika
Dan Ilmu Pengetahuan Alam. Universitas Negeri Yogyakarta
Heyne, K. 1987. Styraceae. Tumbuhan Berguna Indonesia Jilid III.Badan Litbang
Kehutanan Jakarta. Hal 1601 – 1609.
Hidayat, T., Yukawa, T., Ito, M. 2005. Molecular phylogenetics of subtribe
Aeridinae (Orchidaceae): insights from plastid matK and nuclear
ribosomal ITS sequences. Journal of Plant Research 118(4):84-271.
Holt, S. D. S., Horová, L., Bureš, P., Janeček, J., Černoch, V. 2005. The trnL-F
plastid DNA characters of three Poa pratensis (Kentucky Bluegrass)
varieties. Plant, Soil and Environment 51 (2):94-99.
Hutapea, J.R. 1994. Inventaris Tanaman Obat Indonesia. Edisi Ketiga. Jakarta.
Departemen Kesehatan RI. Hal 279.
Irawan, P.D., Tallei, T., Kolondam, B. 2016. Analisis sekuens dan filogenetik
beberapa tumbuhan syzygium (Myrtaceae) di Sulawesi Utara berdasarkan
gen matK.
Jayusman. 2014. Mengenal Pohon Kemenyan(Styrax spp.) Jenis dengan
Spektrum Pemanfaatan Luas yang Belum Dioptimalkan. Institut Pertanian
Bogor Press. Bogor.
Kimura, M. 1980. A simple methode for estimating evolutionary rates of base
substitutions through comparative studies of nucleotide sequences. J Mol
Evol 16:111-120.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A.,
McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R.,
Thompson, J. D., Gibson, T. J., Higgins, D. G. 2007. ClustalW and
ClustalX version 2. Bioinformatics 23 (21):2947-2948.
Lestari, W.S. (2014).Molecular phylogeny of maidenhair fern genus Adiantum
(Pteridaceae) from Lesser Sunda islands Indonesia based on rbcl gene and
trnl-f (Thesis). Program Pascasarjana Universitas Udayana.
Mirabella, F.M. 2011. Pendekatan Pohon dalam Filogenetik. Program Studi
Teknik Informatika. Institut Teknologi Bandung.
Universitas Sumatera Utara
Mondini, L., Noorani, A., Pagnotta, M. A. 2009. Review: assessing plant genetic
diversity by molecular tools. Diversity 1:19-35. DOI : 10.3390/d1010019.
Oetomo, M.S. 1974. Styrax benzoine dryand. Universitas Sumatera Utara. Medan.
Pirie, M.D., Vargas, M.P.B., Bottermans, M., Bakker, F.T., Chatrou, L.W. 2007.
Ancient paralogy in the cpDNA trnL-F region in Annonaceae:
implications for plant molecular systematics.Am J Bot 94:1003-1016.
Provan, J., Soranzo, N., Wilson, N.J., Goldstein, D.B., Powell, W. 1999. A low
mutation rate for chloroplast microsatellites. Genetics 153(2):943-7.
Pryer, K. M., Smith, A. R., Skog, J. E. 1995. Phylogenetic relationships of extant
ferns based on evidence from morphology and rbcL sequences. American
Fern Journal 85 (4):205-282.
Rajagukguk, K. 2009. Analisis Faktor Penyebab penurunan Intensitas
PengelolaanHutan Kemenyan, Studi Kasus: Hutan Kemenyan di Desa
Tangga BatuBarat, Kecamatan Tampahan, Kabupaten Tobasa. Unversitas
SumateraUtara Press. Medan.
Sauer, P., Muller, J. Kang. 1998. Quantitation DNA. Qiagen News. Vol. 2: 23-26.
Settani, L. Valmorri, S., Sinderen, D., Suzzi, G., Paparella, a., Corsetti, A. 2006.
Combination of multiplex PCR and PCR-denaturing gradient gel
electrophoresis
for
monitoring
common
sourdough-associated
Lactobacillus species. Aplication Environ Microbiology 72(5): 3793-3796.
Silalahi, J, dkk. (2013). Buku Kecil: Kemenyan Getah Berharga Tano Batak.
Balai Penelitian Kehutanan Aek Nauli. Parapat.
Simpson, M.G. 2006. Plant Systematic. California: Elsevier Academic press.
Siregar, M. 2001. Analisis Kesejahteraan Petani Kemenyan Sebagai Komoditi
Unggulan di Kabupaten Tapanuli Utara (Tesis). Program Pasca Sarjana
Universitas Sumatera Utara. Medan
Small, R. L., Cronn, R. C., Wendel, J. F. 2004. L. A. S. Johnson review No. 2: use
of nuclear genes for phylogeny reconstruction in plants. Australian
Systematic Botany 17:145-170.
Snustad, D Peter , Michael J. Simmons. 2003. Principles of Genetics.3rd ed. John
Wiley and Sons, Inc, New York: 840 hlm.
Soltis, D. E. and Soltis, P. S. 1998. Choosing an approach and an appropriate
gene for phylogenetic analysis. In: Soltis, D. E., Soltis, P. S., Doyle, J. J.,
Universitas Sumatera Utara
editors. Molecular Systematics of Plants II: DNA Sequencing.Netherlands:
Kluwer Academic Publishers. ISBN : 0-412-11131-4. p. 1-42.
Steenis, V. 1953. Styracaceae. Flora Malesiana Ser. I, Vol.42.
Su, H et al. 2003. The Great Wall of China: a physical barrier to gene
flow?.Heredity, Volume 9 Pages 212-219.
Taberlet, P., Gielly, L., Pautou, G., J. Bouvet. 1991. Universal primers for
amplification of three non-coding regions of chloroplast DNA. Plant
Molecular Biology 17:1105-1109.
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S. 2011.
MEGA5: Molecular Evolutionary Genetics Analysis using Maximum
Likelihood, Evolutionary Distance, and Maximum Parsimony Methods.
Molecular Biology and Evolution 28 (10):2731-2739. DOI :
10.1093/molbev/msr121.
Tjitrosoepomo, G. 1994. Taksonomi Tumbuhan Obat-Obatan. Cetakan I. Gajah
Mada University Press. Yogyakarta.
Tsai, L., Yu, Y., Hsieh, H., Wang, J., Linacre, A., Lee, J. C. 2006. Species
identification using sequences of the trnL intron and the trnL-trnF IGS of
chloroplast genome among popular plants in Taiwan. Forensic
ScienceInternational 164:193-200. DOI : 10.1016/j.forsciint.2006.01.007.
TürktaşM., Meral A., Erdal K., et al. 2012. Molecular characterization of
phylogeneticrelationships in Fritillaria species inferred from chloroplast
trnL-trnF sequences.TÜBİTAK Marmara Research Center, Genetic
Engineering and Biotechnology Institute, Gebze, Kocaeli. Turkey.
Ubaidillah, R., Sutrisno, H. 2009. Pengantar Biosistemik: Teori dan Praktik.
Jakarta: Lipi Press.
Universitas Sumatera Utara