Costs Strategies for moving from conservation to utilisation

54 Utilisation and conservation of farm animal genetic resources Gustavo Gandini and Kor Oldenbroek Roughsedge, T., B. Villanueva and J.A. Woolliams, 2006. Determining the relationship between restorative potential and size of a gene bank to alleviate the risks inherent in a scrapie eradication breeding programme. Livestock Science 100: 231-241. Sæther, N.H., H. Sickel, A. Norderhaug, M Sickel and O. Vangen, 2006. Plant and vegetation preferences for a high and a moderate yielding Norwegian dairy cattle breed grazing semi-natural mountain pastures. Animal Research 55: 367-387. Signorello, G. and G. Pappalardo, 2003, Domestic animal biodiversity conservation: a case study of rural development plans in the European Union. Ecological Economics 45: 487-499. Simianer, H., S.B. Reist-Marti, J. Gibson, O. Hanotte, and J.E.O. Rege, 2003. An approach to the optimal allocation of conservation funds to minimise loss of genetic diversity between livestock breeds. Ecological Economics 45: 377-392. Small R.W., 2004. he role of rare and traditional breeds in conservation: the Grazing Animals Project. In: Farm Animal Genetic Resources BSAS Publication n° 30, G. Simm, B. Villanueva, K.D. Sinclair and S. Townsend Eds., Nottingham University Press, Nottingham, pp. 263-280. Smith C., 1984. Estimated costs of genetic conservation in farm animals. In: FAO Animal Production and Health Paper 441. FAO, Rome, Italy, pp. 21-30. Toro M.A., J. Fernandez and A. Caballero, 2006. Scientiic basis for policies in conservation of farm animal genetic resources. Proceedings 8 th World Congress on Genetics Applied to Livestock Production, CD- ROM Communication No. 33-05. Verrier E., C. Danchin-Burge, S. Moureaux, L. Ollivier, M. Tixier-Boichard, M.J. Maignel, J.P. Bidanel and F. Clement, 2003. What should be preserved: genetic goals and collection protocols for the French National Cryobank. In: Workshop on Cryopreservation of Animal Genetic Resources in Europe, D. Planchenault ed., Paris 2003. Verrier E., M. Tixier-Boichard, R. Bernigaud and M. Naves, 2005. Conservation and value of local livestock breeds: usefulness of niche products andor adaptation to speciic environments. AGRI 36: 21-31. Utilisation and conservation of farm animal genetic resources 55 Chapter 3. What is genetic diversity? John Woolliams 1,2 and Miguel Toro 3 1 Roslin Institute, Roslin, Midlothian EH25 9PS, United Kingdom 2 Department of Animal and Aquacultural Sciences, Norwegian University of Life Science, Box 1432, Ås, Norway 3 Department of Animal Breeding, National Agriculture and Food Research Institute, Carretera La Coruna km7, 28040 Madrid, Spain Questions that will be answered in this chapter: What is meant by diversity? In what ways can diversity be quantiied? To what extent are diferent measures of genetic diversity describing the same phenomenon? How can we measure change in genetic diversity? Summary his chapter surveys the diferent ways in which the diversity we observe within a species can be quantiied. It will consider: 1 how the diversity we observe in the population of a species can be divided into diferences between breeds, or more generally sub- populations, and diferences within these breeds; 2 how diversity within breeds can be described by examining the pedigrees of individuals, or examining the sequences of DNA carried by individuals; 3 how a number of diferent approaches have been used to measure the genetic diversity; and 4 how many of these measures may be related to the concepts of inbreeding.

1. Introduction

Diversity, in its most commonly recognised sense, is the observation of diferent forms and functions between species. However this deinition is too narrow and fails to recognise that individuals within a species also difer in many characteristics or phenotypes; these phenotypes may be qualitative, such as coat colour or pattern, or quantitative, such as height and weight. In domestic animals particular phenotypes will have evolved because of their utility to particular human populations. he most useful concept in quantifying these diferences is the fundamental statistical concept of variance since it can be decomposed into sub components, and in particular, if we • • • •