Distribusi Tikus (Rodentia, Muridae) Di Gunung Bawakaraeng, Sulawesi Selatan, Indonesia
i
DISTRIBUTION OF RATS (RODENTIA, MURIDAE)
IN BAWAKARAENG MOUNTAIN, SOUTH SULAWESI
INDONESIA
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN
GRADUATE SCHOOL
BOGOR AGRICULTURAL UNIVERSITY
BOGOR
2015
ii
iii
STATEMENT ABOUT THESIS, INFORMATION SOURCES,
AND ACT OF SPILLING OVER COPYRIGHTS*
By this writing I clarify that the thesis entitled Distribution of Rats
(Rodentia, Muridae) in Bawakaraeng Mountain, South Sulawesi, Indonesia is my
own work under the supervisions of the advising committee and hasn’t been
proposed for any institution. Copied information source of published and
unpublished writing of other author has been mentioned in the text and
incorporated in the references at the last part of this thesis.
By this writing I hand over the copyright of my thesis to Bogor Agricultural
University.
Bogor, February 2015
Muh. Rizaldi Trias Jaya Putra Nurdin
NIM G352120141
iv
RINGKASAN
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN. Distribusi Tikus (Rodentia,
Muridae) di Gunung Bawakaraeng, Sulawesi Selatan, Indonesia. Dibimbing oleh
BAMBANG SURYOBROTO dan IBNU MARYANTO.
Tikus (Ordo Rodentia, Famili Muridae) terdiri dari lima subfamili yang
telah diketahui sampai saat ini, salah satunya subfamili murinae, 129 genus dan
584 spesies yang ada di dunia. Di Indonesia terdapat sekitar 40 genus dan 156
spesies. Distribusi dan keanekaragaman tikus dipengaruhi oleh faktor lingkungan
seperti kerapatan vegetasi, iklim, ketinggian, tipe habitat, sumber makanan,
penyakit, predasi dan eksploitasi habitat oleh manusia. Sulawesi merupakan salah
satu pulau yang terletak di Indonesia dan juga merupakan salah satu daerah
dengan keanekaragaman jenis yang tinggi. Famili Muridae di Sulawesi Selatan
masih dikategorikan sangat sedikit, sehingga informasi mengenai jumlah,
distribusi, maupun jenis tikus masih sedikit.
Penelitian ini bertujuan untuk menentukan komposisi tikus,
keanekaragaman, preferensi habitat dan pengaruh fase bulan terhadap jumlah
individu tikus yang ditangkap. Analisis data yang dilakukan pada penelitian ini
yaitu menghitung estimasi jumlah tikus yang ditemukan setiap malam
penangkapan dan analisis komponen utama untuk melihat preferensi habitat serta
korelasi antara fase bulan dengan jumlah individu tikus yang ditangkap.
Pengumpulan spesimen tikus dilapangan menggunakan dua jenis
perangkap yaitu perangkap kurungan dan perangkap jepit serta dua jenis umpan
yaitu kelapa bakar dan ikan kering. Sepuluh garis transek diletakkan di setiap tipe
habitat, setiap garis transek terdapat 20 perangkap. Setelah tikus berhasil
didapatkan selanjutnya dilakukan penandaan berupa penomoran spesimen dan
dimasukkan kedalam larutan formalin 10 % untuk diawetkan.
Dalam penelitian ini ditemukan sebanyak empat genus dan 10 jenis tikus.
diantaranya yaitu: Rattus hoffmani, R. dommermani, R. exulans, Bunomys
andrewsi, B. chrysocomus, B. heinrichi, Taeromys celebensis, T. hamatus,
Paruromys dominator, dan Paruromys sp. Pendugaan banyaknya spesies tikus
yang terdapat di gunung Bawakaraeng dapat dihitung berdasarkan banyaknya
jumlah spesies yang didapatkan pada 42 malam penangkapan. Hasil analisis
menjelaskan bahwa pendugaan jumlah spesies yang seharusnya didapatkan
mencapai 11 spesies.
Indeks keanekaragaman Shannon-Wiener menunjukkan nilai indeks yang
tinggi terdapat pada hutan primer (H’=1.805) dan nilai keanekaragaman terendah
terdapat di hutan pinus (H’=0.775). Sedangkan nilai kemerataan yang tertinggi
terdapat di hutan primer (E=0.8214) dan nilai kemerataan yang terendah terdapat
di agroforestry (E=0.6929). Hubungan antara spesies dan habitat menggunakan
Analisis Komponen Utama, menunjukkan bahwa variasi yang dapat dijelaskan
mengunakan tiga komponen sebesar 99% dari total varians. Komponen 1
menjelaskan 65.27%, komponen 2 sebesar 30.12% dan komponen 3 sebesar
3.63%. Genus Rattus dan Bunomys lebih berkorelasi terhadap hutan pegunungan
bagian bawah yaitu kebun campuran dan agroforestry, sedangkan genus
Taeromys dan Paruromys lebih berkorelasi terhadap hutan pegunungan bagian
atas yaitu hutan sekunder dan hutan primer.
v
Hasil Analisis Komponen Utama memperlihatkan aktifitas tikus erat
kaitannya dengan fase bulan. Variasi yang dapat dijelaskan mengunakan tiga
komponen sebesar 98,59%. Komponen 1 menjelaskan 80,14%, komponen 2
sebesar 16,82% dan komponen 3 sebesar 1,63%. Hasil analisis menunjukkan
beberapa spesies mengelompok pada fase bulan tertentu. Dua fase bulan yang
memiliki peran penting bagi kemunculan tikus yaitu bulan baru dan bulan
purnama, jumlah individu lebih banyak ditemukan pada bulan baru sedangkan
jumlah spesies lebih banyak ditemukan pada bulan purnama.
Kata kunci : Tikus, distribusi, preferensi habitat, fase bulan.
vi
SUMMARY
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN. Distribution of Rats
(Rodentia, Muridae) in Bawakaraeng Mountain, South Sulawesi, Indonesia.
Supervised by BAMBANG SURYOBROTO and IBNU MARYANTO
Rats (Order Rodentia, Family Muridae) consists of five subfamilies which
one subfamily murinae, 129 genera and 584 species in the world. In Indonesia,
there are 40 genera and 156 species. Rats distribution and diversity are influenced
by environmental factors, they are vegetation density, climate, altitude, habitat
types, food sources, diseases, predation and habitat exploitation by humans.
Sulawesi is one of the island located in Indonesia and also one of the areas with
high species diversity, while family Muridae in South Sulawesi are poorly known.
This study aims to determine the rats composition and diversity, habitat
preferences and moon phases effect on the number of individual rats were
captured. Data analysis in this research is to determine the estimated number of
rats found each captured and principal component analysis to see the habitat
preferences as well as the correlation between the moon phases with a number of
rats individual were captured.
Specimen collection using two types of traps, they are cage trap and snap
trap and two types of bait that are coconut roasted and dried fish. Ten line transect
which contain 20 traps were placed in each habitat types. Captured rats
individuals were marking and put into 10% formalin for preserved.
A total four genera and 10 species of rodents were captured, they are
Rattus hoffmani, R. dommermani, R. exulans, Bunomys andrewsi, B.
chrysocomus, B. heinrici, Taeromys celebensis, T. hamatus, Paruromys
dominator, and Paruromys sp. The estimation species number that were found in
the mountain Bawakaraeng were calculated based on the number of species found
in 42 nights. The results of analysis explains that the estimation species number
that were reached about 11 species.
Shannon-Wiener diversity index showed a highest index value in the
primary forest (H '= 1.805) and the lowest value of diversity found in pine forests
(H' = 0.775). While the highest evennes value in primary forest (E = 0.8214) and
the lowest value in agroforestry (E = 0.6929). The relationship between species
and habitats using Principle Component Analysis (PCA) can be explained using
three component of 99% the total variance, they are 65.27% (PC1), 30.12% (PC2)
3.63% (PC3). The genera Rattus and Bunomys were correlated with lower
mountain forests they are mixed garden and agroforestry, while the genera
Taeromys and Paruromys were correlated with upper mountain forests, they are
secondary and primary forest.
Principal Component Analysis rats showed the activity closely associated
with the moon phases. Variation can be explained using three factors of 98.59%,
they are explains 80.14% (PC1), 16.82% (PC2) and 1.63% (PC 3). The analysis
showed some species were correlated with moon phases. Rats individuals
captured were commonly found in new moon and full moon, the number of
individuals are more commonly found in a new moon, while rats species number
were commonly found in full moon.
Keywords : Rat, Distribution, Habitat preferences, Moon phase.
vii
© Copy Right owned by IPB, year 2015
All right reserved
No part of this document may be reproduced or trasmitted in any form or by any
means, electronic, mechanical, copying, recording or otherwise, without prior
written permission from IPB.
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DISTRIBUTION OF RATS (RODENTIA, MURIDAE)
IN BAWAKARAENG MOUNTAIN, SOUTH SULAWESI
INDONESIA
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN
An Undergraduate Thesis
In partial fullfilment of Master Science degree in Animal
Bioscience
Faculty of Mathematics and Natural Science
GRADUATE SCHOOL
BOGOR AGRICULTURAL UNIVERSITY
BOGOR
2015
ix
External Member Supervisor Comitte : Dr Ir Dedy Duryadi Solihin, DEA
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FOREWORDS
All praise to Allah SWT for all the hope and give I have got this far. My study
and thesis research would not have been accomplished without the help of many
people. Special thanks to Dr. Bambang Suryobroto and Prof (Ris) Ibnu Maryanto
as supervisory committee, for all guidance and encouragement as well as
invaluable academic advices for the whole period of my study and research.
Thanks to Direktoral Jendral Pendidikan Tinggi (DIKTI) for Beasiswa Unggulan,
Goverment of Gowa, South Sulawesi, staff of Biology Laboratory Makassar
University, Tata Family and All staff of Zoology LIPI. My friends Husni
Mubarok, Agmal Qodri and Ellena Yusti thanks for help in the field. To all my
friends in BSH 2012 and Andika House crew Ariandi, Sunardi, Lukman, Yuzar,
Muh. Nur Kholis, Andi Baso Manguntungi, Kak Syamdi, and specially my best
friend Andi Dewi Rizka AM thanks for support and friendship. Further, I am
highly indebted to my beloved family parents, my Father Drs. H.Nurdin, My
Mother Hj. Sinarwati, and my sisters Risna Ekawati, Rezki Dwi Yanti, Refalinda
Maharani for their love and support who always inspire and encourage me for
higher education.
Bogor, February 2015
Muh. Rizaldi Trias Jaya Putra Nurdin
xii
TABLE OF CONTENTS
LIST OF TABLES
vi
LIST OF FIGURE
vi
LIST OF APENDIXES
vi
1 INTRODUCTION
Background
Aims
1
1
1
2 METHODS
Study Sites
Specimen Collection
Specimen Identification
Reproduction Status
Number of Rats in Relation of Moon Phase
Data Analysis
2
2
3
4
5
5
5
3 RESULTS AND DISCUSSION
RESULTS
Species Captured
Reproduction Status
Habitat Preferences
Number of Rats in Relation of Moon Phase
DISCUSSIONS
Species Captured
Habitat preferences
Number of Rats in Relation of Moon Phase
6
6
6
7
8
9
10
10
11
12
4 CONCLUSIONS
12
REFERENCES
APPENDIXES 1
APPENDIXES 2
APPENDIXES 3
APPENDIXES 4
APPENDIXES 5
BIOGRAPHY
12
15
18
21
22
23
30
xiii
LIST OF TABLES
1
2
3
4
Habitat type description in Bawakaraeng Mountain
Distribution of traps per habitat type
Total effort of rat species in various habitat types
Comparison of diversity and evenness index based on habitat type and
Altitude
5 Total variance and value principle component analysis
6 Total effort of rats species in moon phases
3
4
6
7
9
9
LIST OF FIGURES
1
2
3
4
5
6
7
Collecting specimens sites
Trap of rat
Morphology of rat
Rat morphology skull
Estimation number of rats
Principal Component Analysis (PC1, PC2, PC3) of Habitat Preferences
Principal Component Analysis (PC1, PC2, PC3) of Moon Phases
2
3
4
4
6
8
10
LIST OF APPENDIXES
1
2
3
4
5
Habitat types of rats
Morphology and skull of captured rats
Number of species an individuals per habitat
Total value axis principle component analysis
Rats specimen cataloged in LIPI Cibinong
15
18
21
22
23
1
1 INTRODUCTION
Background
Rat (Ordo Rodentia, family Muridae) consists of five subfamily, one of
them is murinae subfamily, includes 129 genera and 584 species that have been
discovered in the world (Musser and Carleton 2005). In Indonesia there are 40
genera and 156 rats species and some of them are endemic in certain areas
(Suyanto et al. 2002). They show great diversity in ecology, morphology,
behavior and life history strategies (Yihune and Bekele 2012). Rats occupy a wide
range of natural habitats, including forests and grasslands, agricultural landscapes,
villages and townships (Aplin et al. 2003). Rats formed vital components of
ecosystems, they interact extensively with their environments and their activities
have beneficial effects on other organisms in different ecosystems. Rats are
important dietary components for many carnivorous small mammal, raptors, and
reptile (Davies 2002).
Distribution and diversity of rats are affected by environmental factors
such as disease, predation, climate, altitude, type of habitat, food resources, and
habitat exploitation by humans (Johnson and Horn 2008; Heaney et al. 2005).
Many studies have documented that the distribution and diversity of rats decrease
with in creasing density of shrubs and trees (Rosenzweig and Winakur 1969).
Sulawesi is one of the islands located in Indonesia and also one of the are
as with high species diversity (Myers et al. 2000). Many mammalian fauna of
Sulawesi are specific because of very long period of isolation. The location of
Sulawesi is with in the area of Wallacea, the geography which for millions of
years ago were never fused with Sahuland and Sunda lands (Musser and
Dagosto1987). There are 47 species of rodents that widespreadly distributed in
Sulawesi (Suyanto et al. 2002).
Muridae Family in South Sulawesi is poorly known including information
on the number, distribution, and species has not been recorded . Bawakaraeng
mountain is the second highest mountain in the province of South Sulawesi, (S
05°19'01" and E 119°56'40" ), with a height at 2830 meters above sea level (m
asl) it is located ± 90 km from the city of Makassar. The forest type in the
mountain are lowland forest, lower montane forest (secondary) and upper
montane forests (primary) (Hasnawir et al. 2006). Despite the publications of
Musser and Dagosto (1987) and Suyanto et al. (1998) little is known regarding the
distribution of rat species in relation to vegetation, habitat, and altitude.
Aims
This study aims to determine the rats composition and diversity, habitat
preferences and relation between captured individual rat with the moon phases in
Bawakaraeng Mountain.
2
2 METHODS
Study site
This research was conducted for three months from September to
November 2013. There were five main types of habitat: Mixed agricultured
(1300-1499 m asl), Agroforestry (1500-1699 m asl), Pine forest (1700-1899 m
asl), Secondary forest (1900-2099 m asl), and Primary forest (2200 m asl) (Figure
shown appendix 1).
1
2
3
4
5
Figure 1. Specimen collection site (1) MA = Mixed Agricultured (1300-1499
masl);(S05 ° 15'049 "E119 ° 53'934"); (2) AF = Agroforestry 15001699 masl); (S05 ° 15'029 "E119 ° 53'56, 0"); (3) PiF = Pine forest
(1700-1899); (S05 ° 15'488'' E119 ° 54'530''); (4) SF = Secondary
forest (1900 - 2099 masl); (S05 ° 16'47'' E 119 ° 55'01''); (5) PF =
Primary forest (>2100 masl); (S 05 ° 17'12'' E 119 ° 55'48'').
3
Table 1. Habitat types description in Bawakaraeng mountain
No
Habitat Types
Elevation
( m asl)
1300-1499
1
Mixed
Agricultured
2
Agroforestry
1500-1699
3
Pine Forest
1700-1899
4
Secondary
Forest
1900-2099
5
Primary Forest
>2100
Description
The dominant vegetation which are
trees, shrubs, herbs, and flowering
plants. In this area were found a variety
of fruit plants, such as guava and
banana.
The dominant vegetation which are trees
and shrubs are grown around or among
crops or pastureland. It combines
agricultural and forestry to create more
diverse.
The dominant vegetation which are pine,
shrubs, herbs, and ferns. This area were
directly adjacent to forest plantation.
The forest area has a cliffs and
waterfalls. Vegetation in this habitat in
the form of fruit trees, ferns, shrubs, and
herbs.
The forest area has a cliffs, small caves
and river. Vegetation in this habitat
which are trees, ferns, shrubs, and herbs.
Specimen Collection
Captured rats using two types of traps are live traps made of wire with
dimensions of 28 × 12 × 12 cm and trap-flops are made of iron, each trap as many
as 100 traps, as the appeal we use two types of bait that is roasted coconut and
dried fish. Life and snap traps placed randomly with intervals 5 meters per trap
(Table 2). Rats were capture then taken manually, then put in bag for anesthesia.
Rats were given tagging (Labelling) with number of specimens that will provide
information in which location, altitude, date, month, year, gender, and age. The
morphology of the rats was measured using a digital caliper with a level of
accuracy of 0.001 mm. The next sample is preserved in formalin rats 10% to be
identified.
(a)
(b)
Figure 2. (a) Live trap, (b) Snap trap
4
Table 2. Distribution of traps per habitat
Habitat
Mixed Agricultured
Agroforestry
Pine Forest
Secondary Forest
Primary Forest
Total
Total Night
Sampling
17
13
4
3
5
42
Total
Trap
2000
1300
800
600
1000
5700
Specimens Identification
Rats were identified in the Museum Zoologicum Bogoriense (MZB),
Indonesian Institute of Sciences (LIPI), Bogor. Morphology measurement was
done with many variable, they are body weight (BW), head and body length
(HBL), tail length (T), hind foot length (HF), claw in middle finger length (C),
ear length (E) (Figure 3). The identification was done with identifying key by
Nagorsen (2002) and Suyanto (2002). Furthermore, comparison of the skull
between the samples with the rats sample in MZB, skull observed including; 1.
Skull Greatest Length (GSL), 2. braincase Width (BW), 3. zygomatic Breadth
(ZB), 4. Meso pterygoid Width (MPW), 5. Bulla Tymphani Length (BL), 6.
incisive foramina Breadth (IFB), 7. Ramus Angular Process (RAP), 8. Molar
Molar 1 to 3 (M1M3), 9. Molar 1Width (M1W), Molar 2 Width (M2W), and
Molar 3 Width (M3W), 10. Nasal Length (NL ), and 11. Height of braincase (HB)
(Figure 4).
Figure 3. Morphology of rat
5
Figure 4. Rat morphology skull
Reproduction Status
Male and female can be distinguished by observing the external
reproductive organs including the penis in male, vagina and mammary gland in
female rats. Pregnancy in female can be indentified by full and protruding
abdomen. Observations of reproductive condition in females were conducted by
dissecting the abdomen and calculating embryos from the uterus to the left and
right side. While, the male reproductive were observed by enlarged testes.
Number of Rats in Relation of Moon Phases
Number of individu were correlated to the moon phasesby calculatingthe
effort(number of individuals /night/traps) and each phases with Principle
Component Analisys.
Data Analysis
Estimation on species were analyzed by Estimates S 8 to discuss
differences between number of collected and expected species (Colwell and
Gotelli 2000). Shannon-Wiener’s and Evenness index (Magurran 2004), were
used to compare the diversity of rats in each habitat types. Reproduction status
and age categories were identified manually. Principle Component Analysis
(PCA) were categorized rats according to habitat preferences and its relation to
the moon phases using Paleontological Statisticsfor Windows (PAST).
6
3 RESULT AND DISCUSSIONS
RESULTS
Species captured
A total of 227 individuals, four genera and 10 species were trapped in
5700 traps during 42 nights (Appendix 3). The overall trapping success as
follows: Rh= Rattus hoffmani (Matschie 1901), Rd= R. Dommermani (Thomas
1921), Re= R. Exulans (Peale 1848), Ba= Bunomys andrewsi (Allen 1911), Bc=
B. chrysocomus (Hoffmann 1887), Bh= B. Heinrichi (Tate and Archbold 1935),
Tc= Taeromys celebensis (Gray 1867), Th= T. hamatus (Miller and Hollister
1921), Pd= P. dominator (Thomas 1921), and Psp= Paruromys sp. (undescribed)
(figure shown appendix 2).
Table 3. Total effort of rat species in various habitat types
MA
Altitude
(m asl)
1300
Habitat
Rh*
Rd*
Re
Ba*
Bc*
Bh*
Tc*
Th*
Pd*
Psp*
5.5
12.5
24.5
0.5
0.0
0.0
0.0
0.0
0.0
0.0
AF
1500
10.0
3.1
27.7
3.1
0.8
2.3
2.3
1.5
0.0
0.0
PiF
1700
3.8
0.0
20.0
0.0
3.8
0.0
0.0
0.0
0.0
0.0
SF
1900
18.3
1.7
6.7
3.3
3.3
3.3
0.0
0.0
0.0
0.0
2200
13.0
4.0
3.0
2.0
PF
Description: Habitat abbreviation refer to figure 1.
4.0
2.0
1.0
0.0
1.0
1.0
R. hoffmani found in all habitat types those are mixed agricultured,
agroforestry, pine forest, secondary forest, primary forest. The highest individual
number were found in the secondary forest and primary forest. While, R.
dammermani were found in four habitat types and the highest number were found
in mixed. R. exulans found in all habitat type and the highest number were found
in agroforestry and Mixed Agricultured.
B. andrewsi were found in four habitat types, including mixed
agricultured, agroforestry, secondary forest, primary forest.The highest in dividual
number found in secondary forest. B. chrysocomus were found in four habitat
types and the highest individual number were found in the primary forest (2200 m
asl). B. Heinrici were found in three habitat types, they are agroforestry,
secondary forest, and primary forest, and the highest individual number were
found in secondary forest. Individual number commonly found near the river
flow. The lowest individual number were found in agroforestry and primary forest
namely T. Celebensis, T. hamatus, futhermore P. dominator and Paruromys sp.
Estimation of total rats individuals number could be counted based on
number of individuals captured during 42 nights. Total number of species exist in
Bawakaraeng mountain was estimated by Colwell and Gotelli (2000) method.
Figure 5 shows the value of rat species estimation. Estimation of rats species
number during 42 nights were 11 species. Sobs (Mao Tau) is the total number of
species that was captured in this study. Jack 2 mean value is the second order
jacknife richness estimator of species number. Sampling effort in this study were
7
reach maximal, because only one species were estimated not captured yet, the rats
were captured included 10 species.
Figure 5. Estimation curve number of rats individuals, sobs (Mao Tau) is sample
observed, Jack 2 Mean is species estimation number.
Shannon-Wiener diversity index showed the high and low index values in
five different habitats. PF were showed the highest values (H '= 1.805) and PF
were the lowest (H' = 0.775). Evenness values were highest in the PF (E = 0.77)
and the lowest value in the AF (E = 0.6511), but the evenness value of five habitat
types was not significantly difference (E = 0.43 – 0.77).
Table 4. Comparison of diversity and evenness index based on habitat type and
altitude (m above sea level) (N = number of species captured, Sum =
total collected).
S
N
Evenness
ShannonWeiner
MA
(1300-1499)
4
86
0.5806
1.002
AF
(1500-1699)
8
66
0.6511
1.441
PiF
(1700-1899)
3
22
0.4339
0.775
SF
(1900-2099)
6
22
0.6901
1.451
PF
(2200)
9
31
0.77
1.805
Reproduction Status
The number of rats capture by sex were 114 male (50.22%) and 113
female (49.77%). It has been recorded that 30 individual females who are
pregnant and 83 non-pregnant individuals, calculated based on the number of
embryos individuals who have been pregnant, Rattus hoffmani consists of 9
individuals and has a total of 40 embryos (17 left, 23 right). Rattus dammermani
consists of 6 individuals and has a total of 19 embryos (10 left, 9 right), Rattus
exulans consists of 12 individuals and has a total of 38 embryos (17 left, 21 right),
Bunomys andrewsi consists of two individuals with a total of 6 embryos (2 left, 4
right), Bunomys chrysocomus consists of two individuals with a total of 4
embryos (2 left, 2 right). In addition, male rats that had a reproduction period are
47 individuals with has a Outside testes and 67 individuals with has inside testes.
8
Habitat Preferences
Principle Component Analysis (PCA) showed variation in three factors,
total varians 75.23%. First component showed 50.38%, and second component
24.85% (Figure 6). Analysis results suggested some species were clumped into
certain habitat. R. dammermani and R. exulans were greatly related to
Agroforestry (1500 m asl). Dominantion of these species populations would be
greater in habitat which more than 1500 m asl altitude. R. dammermani prefer to
the mixed agricultured (1300-1500 m asl). In contrast, R. exulans prefer to scrub
and secondary forest. R. hoffmani has opposite dominantion pattern with R.
exulans. The dominantion would be greater if population in Montane, Sub
Montane and higher altitute habitat were changed into secondary forest. Whereas,
dominantion would be lower if species occured in less than 1500 m asl.
B. andrewsi and B. Hainrichi were sympatrical in Montane forest (> 1800
m asl), especially in secondary forest. While B. Chysocomus has greater habitat
preferences than B. andrewsi and B. heinrichi, from agroforestry (1500 m asl),
pine forest (1700 m asl), and primary forest (2200 m asl). Both T. hamatus and T.
chrysocomus were prefer Montane forest in lower altitude (> 1500 m asl). T.
celebensis were still found in primary forest (2200 m asl). P.dominator and
Paruromys sp. were mostly sympatrical and mostly found in 2200 m asl altitude.
Figure 6. Principle Component Analysis ( PC1,PC2, and PC3 )
9
Table 5. Total variance and value principle component analysis
Eigenvalue
% variance
Habitat
MA
AF
PiF
SF
PF
PC1
6.5494
50.38
Axis 1
-2.5107
0.71764
-2.7783
1.5075
3.0639
PC2
3.23044
24.85
Axis 2
0.14481
2.9907
-1.235
-0.3913
-1.5092
PC3
1.89559
14.581
Axis 3
1.3167
0.03132
-0.7665
-1.8862
1.3047
PC4
1.32458
10.189
Axis 4
-1.3205
0.68284
1.2812
-1.1091
0.46553
Number of Rats in Relation of Moon Phases
A total of 24 nights sampling based on moon phases and 5700 traps, effort
of each species were showed in (Table 6). Moon phases divided into five phases
including, A = New Moon, B = Waning Crescent, C = First Quarter, D = Waning
Gibbous, and E = Full Moon.
Table 6. Total effort of rats speciesin moon phases
Moon
Phases
Rh
Rd
Re
Ba
Bc
Bh
Tc
Th
Pd
Psp
A
9.09
B
8.57
2.73
41.82
2.73
0.91
0.91
0.91
0.00
0.00
0.00
1.43
16.19
0.48
1.90
0.95
0.00
0.48
0.00
0.00
C
5.00
2.50
20.00
2.50
0.00
0.00
5.00
0.00
0.00
0.00
D
13.08
16.92
7.69
1.54
2.31
2.31
0.77
0.00
0.77
0.00
E
5.00
6.25
12.50
2.50
2.50
1.25
0.00
1.25
0.00
1.25
Description: : A= New Moon, B= Waxing Crescent, C= First quarter, D= Waning gibbous, E=
Full moon (Spesies abreviation refer to Table 1)
PCA showed number of rats trapped were related to moon phases.
Variation can be explained using three factors in 98.59% total. First component
showed 80.14%, second component 16.82% and third component 1.63% of total
varians. Some species were clumped in certain moon phases. R. dammermani and
R. hoffmani has a great related to waning gibbous. Dominantions of R.
dammermani and R. hoffmani would be lower in waxing crescent and full moon
and first quarter, respectively. In contrast, R. exulans were mostly found in new
moon and have a great number in first quarter. Then, decreased in waning
gibbous.
B. andrewsi were related to new moon, while B. chrysocomus and B.
heinrichi are mostly found in wanning gibous. Dominantion of B. chrysocomus
were increased until full moon. T. celebensis were related to new moon, inspite of
dominantion of this species were mostly found in first quarter. Futhermore, T.
hamatus, P. dominator, and Paruromys sp. were sympatrical in full moon. Two
moon phases has an important role in number of rats, those are new moon and full
moon. Number of rat individual were greater in new moon, whereas the number of
rat species were greater in full moon.
10
Figure 7. Principle component analysis of individual rats number in relation to
moon phase. (Abbreviations of moon phase refer to Table 6).
DISCUSSIONS
Species Captured
Two components of diversity index were used in this study those are
Shannon-Weiner and evenness. Both index were not always showed the same
trend in diversity. The number of rat individual were not proportional to the
number of rats species. Peet (1974) noted that the Shannon-Weiner index is very
sensitive to changes species abundance. The highest number of rat species were
found in the primary forest (2200 m asl), about 9 species were found. It suspected
because natural environmental conditions. While, the lowest species number were
found in the pine forest (1700 m asl) that were found only three species and
suspected because shrubs and food availability were decreased. Maryanto and
Yani (2003) reported that rat species in Lore Lindu National Park in total 20
species were captured, of which 18 species endemic to Sulawesi, diversity index
11
showed a stable value at in altitude range 900 to1199 (m asl) in total 14 species
and decrease with altitude 2100 m asl in total 8 species in Lore Lindu National
Park, Central Sulawesi.
Very low capture rate caused trouble to document patterns of association
in the mountain Bawakaraeng. The success of the overall traps around 3.9%, with
an average installation of 200 traps per night (a total of 5700 trap). The capture
rate is comparable with the figures reported by Maryanto and Yani (2003) of the
Lore Lindu National Park, Central Sulawesi where the successful arrest of about
1%, with an average of 104 traps were installed on every night. The success rate
of this arrest does not seem so low when compared with other tropical Asian
studies. Medway (1972) reported on Mount Benom, West Malaysia, at an altitude
of 300-2400 m asl wear 50 per night trap used to catch any small mammals (Total
5777 trap). Heaney et al. (1989) reported on Leyte Island, Philippines, at 300-900
m above sea level, using 30 traps per night (Total 3485 trap).
Estimaton of rats is calculated in order to determine the number of species
that have not been obtained and compared with that obtained during the study
species. Some factors that suspected causing other rats species were not captured
including time sampling, trap efficiency. It is possibility to get 11 species of rats if
adding sampling duration. Beside that, the highest number rats individuals
captured were in snap trap than cage trap. Leal (1990) reported that snap trap that
used to trapped small mammals more effective than cage trap.
Habitat Preferences
Rats are very active animals and can be found in various types of habitats.
Rats were intimately associated with foraging patterns and environmental factors.
In this study, we found two genera that were adaptive to the altered habitat,
including Rattus and Bunomys. It because of both genera found at lowest to
highest altitude. Some species Taeromys and Paruromys were also found in
certain area. Rattus are usually found in various habitat types, including in
disturbed or agricultural area. In Philippines, Rattus were found in all altitude at
different habitat such as agricultural, tropical and sub-tropical forest, pine forest,
also villages (Barbehenn et al. 1973).
Bunomys commonly found in primary forest and also be found in the little
altered habitat. These genera mostly found at the river side, which the frogs, small
lizards and earthworms as the diets (Musser and Carleton 2005). On the study of
Sulawesi, Musser (1991) showed the widespread and common species of rats
were R. hoffmani. These species were also distributed in all habibat types of
Bawakaraeng mountain. In addition, these species abundant in 1900 to 2200 m
asl. In the Lore Lindu National Park, Bunomys penitus, Paruromys dominator,
Margaretamys elegans, Maxomys wattsi and Melasmothrix naso found in 600 to
1800 m asl (Musser and Dagosto 1987). Genus Taeromys found in Sulawesi at
1.200 m asl, and can be found in the lowland tropical rain forest (Musser and
Carleton 2005). P. dominator, were endemic to Sulawesi, this species is only
found in the tropical mountain, never found in the lowlands (Musser and Carleton
2005).
12
Number of Rats in Relation of Moon Phases
Rats make foraging decisions by balancing the demands for energy gain,
mating and other needs, to identify variations in the risk of predators, nocturnal
rodents can use the moon as alight cue (Nathan et al. 2013). Animals are active at
night (nocturnal) have behaviours and activities related to changing light
conditions, the light of the moon cycle (Lang et al. 2005). Categorized into five
cycles of the moon phases is waning crescant, new moon, first quarter, Waning
Gibbous, and full moon (Lang et al. 2005).
4 CONCLUSIONS
A total of 227 individual rats (Muridae) were captured in five altitude and
different habitat types in Bawakaraeng Mountain, South Sulawesi used cage traps
and snap trap. habitat types diversity of rats in the mountains above higher than
Mixed Agricultured, agroforestry, pine forest and secondary forest. Shannon
Wiener diversity decreased weredepended to species richness at sites. The number
of rats captured by sex were 114 male rats (50.22%) and 113 female rats
(49.77%). Habitat preferences indicate that most species prefer toprimary forests
and agroforestry. The relationship between rats behaviour and moon phases
showed that the behavior rats out of the nest was higher in the new moon phases
than full moon phases.
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Colwell RK, Gotelli JN. 2000. Estimates-statistical estimation of species richness
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Suyanto A, Yoneda M, Maryanto I, Maharadatunkamsi, Sugardjito J. 2002.
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15
APPENDIXES 1
1. Habitat types of rats in Bawakaraeng mountain
Mixed Agricultured (1300-1499 m asl)
Agroforestry (1500-1699 m asl)
16
Pine Forest (1700-1899 m asl)
Secondary Forest (1900-2099 m asl)
17
Primary Forest (>2200 m asl)
18
APPENDIXES 2
2. Morphology and Skull of captured rats in Bawakaraeng Mountain
Rattus hoffmani
Rattus exulans
Rattus dammermani
19
Bunomys andrewsi
Bunomys chrysocomus
Bunomys heinrichi
20
Taeromys celebensis
Taeromys hamatus
Paruromys dominator
21
APPENDIXES 3
3. Number of species an individuals per habitat
Lokasi
Jumlah Malam
Jumlah Perangkap
Rattus hoffmani
Rattus dommermani
Rattus exulans
Bunomys andrewsi
Bunomys chrysocomus
Bunomys heinrichi
Taeromys celebensis
Taeromys hamatus
Paruromys dominator
Paruromys sp
Total Individu
MA
AF
PiF
SF
PF
Total
17
2000
11
25
49
1
0
0
0
0
0
0
86
13
1300
13
4
36
4
1
3
3
2
0
0
66
4
800
3
0
16
0
3
0
0
0
0
0
22
3
600
11
1
4
2
2
2
0
0
0
0
22
5
1000
13
4
3
2
4
2
1
0
1
1
31
42
5700
51
34
108
9
10
7
4
2
1
1
227
22
APPENDIXES 4
4. Total value axis principle component analysis
Parameter Axis 1
S
0.3591
E
0.3613
SW
0.383
Rh
0.3282
Rd
-0.1129
Re
-0.2715
Ba
0.3088
Bc
0.1498
Bh
0.3315
Tc
0.1775
Th
0.06125
Pd
0.2615
Psp
0.2615
Axis 2
0.1478
0.03907
0.04117
-0.0102
0.06991
0.3854
0.2611
-0.4034
0.1354
0.4098
0.5175
-0.2612
-0.2612
Axis 3
0.1884
0.1619
0.1248
-0.2916
0.5051
0.1093
-0.2527
-0.278
-0.3182
0.1791
0.00924
0.3848
0.3848
Axis 4
0.1155
-0.2616
-0.0561
-0.317
-0.5611
0.106
-0.1609
0.3696
-0.1489
0.379
0.2882
0.1965
0.1965
23
APPENDIXES 5
3. Rat specimens catalogue in LIPI Cibinong
Origin
Sex
Age
Specimen
Number of
catalogue LIPI
Rattus hoffmani
Mixed Agricultured
Female
Adult
37042
MR2
Rattus exulans
Mixed Agricultured
Male
Adult
37093
25/09/2013
MR3
Rattus dommermani
Mixed Agricultured
Female
Adult
37210
25/09/2013
MR4
Rattus exulans
Mixed Agricultured
Female
Adult
37094
25/09/2013
MR5
Rattus exulans
Mixed Agricultured
Male
Adult
37095
25/09/2013
MR6
Rattus exulans
Mixed Agricultured
Female
Adult
37096
25/09/2013
MR7
Rattus exulans
Mixed Agricultured
Male
Adult
37097
25/09/2013
MR8
Rattus exulans
Mixed Agricultured
Male
Adult
37098
25/09/2013
MR9
Rattus hoffmani
Mixed Agricultured
Female
Adult
37043
26/09/2013
MR10
Rattus exulans
Mixed Agricultured
Female
Adult
37099
26/09/2013
MR11
Rattus exulans
Mixed Agricultured
Male
Adult
37100
26/09/2013
MR12
Rattus exulans
Mixed Agricultured
Male
Adult
37101
26/09/2013
MR13
Rattus exulans
Mixed Agricultured
Female
Adult
37102
26/09/2013
MR14
Rattus exulans
Mixed Agricultured
Male
Adult
37103
26/09/2013
MR15
Rattus exulans
Mixed Agricultured
Male
Adult
37104
26/09/2013
MR16
Rattus exulans
Mixed Agricultured
Female
Adult
37105
26/09/2013
MR17
Rattus exulans
Mixed Agricultured
Male
Adult
37106
26/09/2013
MR18
Rattus exulans
Mixed Agricultured
Female
Adult
37107
26/09/2013
MR19
Rattus hoffmani
Mixed Agricultured
Male
Adult
37044
27/09/2013
MR20
Bunomys andrewsi
Mixed Agricultured
Male
Adult
37235
27/09/2013
MR21
Rattus exulans
Mixed Agricultured
Male
Adult
37108
27/09/2013
MR22
Rattus exulans
Mixed Agricultured
Female
Adult
37109
27/09/2013
MR23
Rattus exulans
Mixed Agricultured
Male
Adult
37110
27/09/2013
MR24
Rattus exulans
Mixed Agricultured
Female
Adult
37111
27/09/2013
MR25
Rattus exulans
Mixed Agricultured
Male
Adult
37112
27/09/2013
MR26
Rattus exulans
Mixed Agricultured
Female
Adult
37113
27/09/2013
MR27
Rattus exulans
Mixed Agricultured
Female
Adult
37114
27/09/2013
MR28
Rattus exulans
Mixed Agricultured
Male
Adult
37115
27/09/2013
MR29
Rattus exulans
Mixed Agricultured
Male
Adult
37116
27/09/2013
MR30
Rattus exulans
Mixed Agricultured
Female
Adult
37117
27/09/2013
MR31
Rattus exulans
Mixed Agricultured
Female
Juvenile
37118
27/09/2013
MR32
Rattus exulans
Mixed Agricultured
Male
Juvenile
37119
29/09/2013
MR33
Rattus hoffmani
Pine Forest
Female
Adult
37045
29/09/2013
MR34
Bunomys chrysocomus
Pine Forest
Male
Adult
37404
Dates
Capture
No
Spesimen
23/09/2013
MR1
25/09/2013
Nama Specimen
24
29/09/2013
MR35
Rattus exulans
Pine Forest
Male
Adult
37120
29/09/2013
MR36
Rattus exulans
Pine Forest
Female
Adult
37121
30/09/2013
MR37
Rattus exulans
Pine Forest
Male
Adult
37122
30/09/2013
MR38
Rattus exulans
Pine Forest
Male
Adult
37123
30/09/2013
MR39
Rattus exulans
Pine Forest
Male
Subadult
37124
01/10/2013
MR40
Rattus hoffmani
Pine Forest
Male
Adult
37046
01/10/2013
MR41
Bunomys chrysocomus
Pine Forest
Female
Adult
37405
01/10/2013
MR42
Rattus hoffmani
Pine Forest
Male
Adult
37047
01/10/2013
MR43
Rattus exulans
Pine Forest
Female
Adult
37125
01/10/2013
MR44
Rattus exulans
Pine Forest
Male
Adult
37126
01/10/2013
MR45
Rattus exulans
Pine Forest
Male
Adult
37127
01/10/2013
MR46
Rattus exulans
Pine Forest
Male
Adult
37128
01/10/2013
MR47
Rattus exulans
Pine Forest
Male
Adult
37129
01/10/2013
MR48
Rattus exulans
Pine Forest
Female
Adult
37130
01/10/2013
MR49
Rattus exulans
Pine Forest
Female
Adult
37131
01/10/2013
MR50
Rattus exulans
Pine Forest
Male
Adult
37132
01/10/2013
MR51
Bunomys chrysocomus
Pine Forest
Male
Adult
37406
05/10/2013
MR52
Rattus exulans
Pine Forest
Male
Adult
37133
05/10/2013
MR53
Rattus exulans
Pine Forest
Male
Adult
37134
05/10/2013
MR66
Rattus exulans
Pine Forest
Female
Adult
37135
08/10/2013
MR54
Rattus dommermani
Secondary Forest
Male
Adult
37211
08/10/2013
MR55
Rattus hoffmani
Secondary Forest
Male
Adult
37048
08/10/2013
MR56
Rattus hoffmani
Secondary Forest
Female
Adult
37049
08/10/2013
MR57
Rattus hoffmani
Secondary Forest
Female
Adult
37050
08/10/2013
MR58
Rattus hoffmani
Secondary Forest
Female
Adult
37051
08/10/2013
MR59
Rattus hoffmani
Secondary Forest
Male
Adult
37052
08/10/2013
MR60
Rattus hoffmani
Secondary Forest
Female
Adult
37053
08/10/2013
MR61
Bunomys andrewsi
Secondary Forest
Female
Adult
37236
08/10/2013
MR62
Rattus hoffmani
Secondary Forest
Male
Adult
37054
08/10/2013
MR63
Rattus hoffmani
Secondary Forest
Female
Adult
37055
08/10/2013
MR64
Rattus exulans
Secondary Forest
Female
Adult
37136
08/10/2013
MR65
Rattus exulans
Secondary Forest
Female
Adult
37137
09/10/2013
MR67
Rattus hoffmani
Secondary Forest
Male
Adult
37056
09/10/2013
MR68
Bunomys chrysocomus
Secondary Forest
Male
Adult
37407
09/10/2013
MR69
Rattus exulans
Secondary Forest
Female
Adult
37138
12/10/2013
MR70
Bunomys andrewsi
Secondary Forest
Male
Adult
37413
12/10/2013
MR71
Bunomys heinrichi
Secondary Forest
Male
Adult
37285
12/10/2013
MR72
Rattus hoffmani
Secondary Forest
Female
Adult
37057
12/10/2013
MR92
Rattus hoffmani
Secondary Forest
Female
Adult
37058
12/10/2013
MR93
Bunomys heinrichi
Secondary Forest
Female
Subadult
37290
12/10/2013
MR94
Bunomys chrysocomus
Secondary Forest
Male
Adult
37408
25
12/10/2013
MR95
Rattus exulans
Secondary Forest
Male
Juvenile
37139
13/10/2013
MR73
Rattus dommermani
Primary Forest
Male
Adult
37212
13/10/2013
MR74
Taeromys celebensis
Primary Forest
Female
Adult
37421
13/10/2013
MR75
Paruromys dominator
Primary Forest
Female
Adult
37423
13/10/2013
MR76
Rattus hoffmani
Primary Forest
Female
Adult
37059
13/10/2013
MR77
Rattus hoffmani
Primary Forest
Female
Adult
37060
13/10/2013
MR78
Rattus hoffmani
Primary Forest
Male
Adult
37061
13/10/2013
MR79
Bunomys heinrichi
Primary Forest
Female
Adult
37291
13/10/2013
MR80
Rattus dommermani
Primary Forest
Female
Adult
37213
13/10/2013
MR81
Rattus hoffmani
Primary Forest
Female
Adult
37062
13/10/2013
MR82
Rattus dommermani
Primary Forest
Male
Adult
37214
13/10/2013
MR83
Rattus hoffmani
Primary Forest
Female
Adult
37063
13/10/2013
MR84
Bunomys chrysocomus
Primary Forest
Female
Adult
37409
13/10/2013
MR85
Rattus dommermani
Primary Forest
Female
Adult
37215
13/10/2013
MR86
Rattus hoffmani
Primary Forest
Female
Adult
37064
14/10/2013
MR87
Rattus exulans
Primary Forest
Male
Adult
37140
14/10/2013
MR88
Rattus hoffmani
Primary Forest
Female
Adult
37065
14/10/2013
MR89
Rattus hoffmani
Primary Forest
Male
Adult
37066
14/10/2013
MR90
Rattus hoffmani
Primary Forest
Male
Adult
37067
14/10/2013
MR91
Bunomys chrysocomus
Primary Forest
Female
Adult
37286
15/10/2013
MR96
Rattus hoffmani
Primary Forest
Male
Adult
37068
15/10/2013
MR97
Paruromys sp
Primary Forest
Female
Adult
37426
15/10/2013
MR99
Rattus hoffmani
Primary Forest
Female
Adult
37069
15/10/2013
MR100
Bunomys andrewsi
Primary Forest
Female
Adult
37414
15/10/2013
MR101
Rattus exulans
Primary Forest
Female
Adult
37141
16/10/2013
MR102
Bunomys andrewsi
Primary Forest
Male
Adult
37415
16/10/2013
MR103
Bunomys chrysocomus
Primary Forest
Male
Adult
37410
16/10/2013
MR104
Bunomys heinrichi
Primary Forest
Male
Adult
37287
16/10/2013
MR105
Bunomys chrysocomus
Primary Forest
Male
Adult
37411
16/10/2013
MR106
Rattus hoffmani
Primary Forest
Female
Adult
37070
16/10/2013
MR107
Rattus exulans
Primary Forest
Female
Subadult
37142
17/10/2013
MR108
Rattus hoffmani
Primary Forest
Female
Adult
37071
01/11/2013
MR98
Bunomys heinrichi
Agroforestry
Male
Adult
37419
01/11/2013
MR109
Suncus murinus
Agroforestry
Female
Adult
37427
01/11/2013
MR110
Rattus exulans
Agroforestry
Female
Adult
37143
01/11/2013
MR111
Suncus murinus
Agroforestry
Female
Adult
37428
01/11/2013
MR112
Rattus hoffmani
Agroforestry
Female
Adult
37072
01/11/2013
MR113
Rattus exulans
Agroforestry
Male
Adult
37144
01/11/2013
MR114
Bunomys heinrichi
Agroforestry
Female
Adult
37289
02/11/2013
MR115
Suncus murinus
Agroforestry
Male
Adult
37429
02/11/2013
MR116
Suncus murinus
Agroforestry
Female
Adult
37430
26
02/11/2013
MR117
Rattus exulans
Agroforestry
Male
Adult
37145
04/11/2013
MR118
Taeromys celebensis
Agroforestry
Female
Adult
37292
04/11/2013
MR119
Bunomys heinrichi
Agroforestry
Female
Adult
37420
04/11/2013
MR120
Rattus dommermani
Agroforestry
Female
Adult
37216
04/11/2013
MR121
Rattus hoffmani
Agroforestry
Male
Adult
37073
04/11/2013
MR122
Rattus exulans
Agroforestry
Male
Adult
37146
04/11/2013
MR123
Rattus exulans
Agroforestry
Male
Adult
37147
04/11/2013
MR124
Suncus murinus
Agroforestry
Female
Adult
37431
04/11/2013
MR125
Rattus exulans
Agroforestry
Male
Adult
37148
04/11/2013
MR126
Suncus murinus
Agroforestry
Female
Adult
37432
04/11/2013
MR127
Suncus murinus
Agroforestry
Male
Adult
37433
04/11/2013
MR128
Rattus exulans
Agroforestry
Male
Adult
37149
04/11/2013
MR129
Rattus exulans
Agroforestry
Male
Adult
37150
04/11/2013
MR130
Rattus exulans
Agroforestry
Male
Adult
37151
04/11/2013
MR131
Rattus exulans
Agroforestry
Male
Adult
37152
04/11/2013
MR132
Suncus murinus
Agroforestry
Male
Adult
37434
05/11/2013
MR133
Rattus hoffmani
Agroforestry
Female
Adult
37074
05/11/2013
MR134
bunomys andrewsi
Agroforestry
Male
Adult
37288
05/11/2013
MR135
Rattus hoffmani
Agroforestry
Male
Adult
37075
05/11/2013
MR136
Bunomys chrysocomus
Agroforestry
Male
Adult
37412
05/11/2013
MR137
Rattus exulans
Agroforestry
Female
Adult
37153
05/11/2013
MR138
Rattus hoffmani
Mixed A
DISTRIBUTION OF RATS (RODENTIA, MURIDAE)
IN BAWAKARAENG MOUNTAIN, SOUTH SULAWESI
INDONESIA
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN
GRADUATE SCHOOL
BOGOR AGRICULTURAL UNIVERSITY
BOGOR
2015
ii
iii
STATEMENT ABOUT THESIS, INFORMATION SOURCES,
AND ACT OF SPILLING OVER COPYRIGHTS*
By this writing I clarify that the thesis entitled Distribution of Rats
(Rodentia, Muridae) in Bawakaraeng Mountain, South Sulawesi, Indonesia is my
own work under the supervisions of the advising committee and hasn’t been
proposed for any institution. Copied information source of published and
unpublished writing of other author has been mentioned in the text and
incorporated in the references at the last part of this thesis.
By this writing I hand over the copyright of my thesis to Bogor Agricultural
University.
Bogor, February 2015
Muh. Rizaldi Trias Jaya Putra Nurdin
NIM G352120141
iv
RINGKASAN
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN. Distribusi Tikus (Rodentia,
Muridae) di Gunung Bawakaraeng, Sulawesi Selatan, Indonesia. Dibimbing oleh
BAMBANG SURYOBROTO dan IBNU MARYANTO.
Tikus (Ordo Rodentia, Famili Muridae) terdiri dari lima subfamili yang
telah diketahui sampai saat ini, salah satunya subfamili murinae, 129 genus dan
584 spesies yang ada di dunia. Di Indonesia terdapat sekitar 40 genus dan 156
spesies. Distribusi dan keanekaragaman tikus dipengaruhi oleh faktor lingkungan
seperti kerapatan vegetasi, iklim, ketinggian, tipe habitat, sumber makanan,
penyakit, predasi dan eksploitasi habitat oleh manusia. Sulawesi merupakan salah
satu pulau yang terletak di Indonesia dan juga merupakan salah satu daerah
dengan keanekaragaman jenis yang tinggi. Famili Muridae di Sulawesi Selatan
masih dikategorikan sangat sedikit, sehingga informasi mengenai jumlah,
distribusi, maupun jenis tikus masih sedikit.
Penelitian ini bertujuan untuk menentukan komposisi tikus,
keanekaragaman, preferensi habitat dan pengaruh fase bulan terhadap jumlah
individu tikus yang ditangkap. Analisis data yang dilakukan pada penelitian ini
yaitu menghitung estimasi jumlah tikus yang ditemukan setiap malam
penangkapan dan analisis komponen utama untuk melihat preferensi habitat serta
korelasi antara fase bulan dengan jumlah individu tikus yang ditangkap.
Pengumpulan spesimen tikus dilapangan menggunakan dua jenis
perangkap yaitu perangkap kurungan dan perangkap jepit serta dua jenis umpan
yaitu kelapa bakar dan ikan kering. Sepuluh garis transek diletakkan di setiap tipe
habitat, setiap garis transek terdapat 20 perangkap. Setelah tikus berhasil
didapatkan selanjutnya dilakukan penandaan berupa penomoran spesimen dan
dimasukkan kedalam larutan formalin 10 % untuk diawetkan.
Dalam penelitian ini ditemukan sebanyak empat genus dan 10 jenis tikus.
diantaranya yaitu: Rattus hoffmani, R. dommermani, R. exulans, Bunomys
andrewsi, B. chrysocomus, B. heinrichi, Taeromys celebensis, T. hamatus,
Paruromys dominator, dan Paruromys sp. Pendugaan banyaknya spesies tikus
yang terdapat di gunung Bawakaraeng dapat dihitung berdasarkan banyaknya
jumlah spesies yang didapatkan pada 42 malam penangkapan. Hasil analisis
menjelaskan bahwa pendugaan jumlah spesies yang seharusnya didapatkan
mencapai 11 spesies.
Indeks keanekaragaman Shannon-Wiener menunjukkan nilai indeks yang
tinggi terdapat pada hutan primer (H’=1.805) dan nilai keanekaragaman terendah
terdapat di hutan pinus (H’=0.775). Sedangkan nilai kemerataan yang tertinggi
terdapat di hutan primer (E=0.8214) dan nilai kemerataan yang terendah terdapat
di agroforestry (E=0.6929). Hubungan antara spesies dan habitat menggunakan
Analisis Komponen Utama, menunjukkan bahwa variasi yang dapat dijelaskan
mengunakan tiga komponen sebesar 99% dari total varians. Komponen 1
menjelaskan 65.27%, komponen 2 sebesar 30.12% dan komponen 3 sebesar
3.63%. Genus Rattus dan Bunomys lebih berkorelasi terhadap hutan pegunungan
bagian bawah yaitu kebun campuran dan agroforestry, sedangkan genus
Taeromys dan Paruromys lebih berkorelasi terhadap hutan pegunungan bagian
atas yaitu hutan sekunder dan hutan primer.
v
Hasil Analisis Komponen Utama memperlihatkan aktifitas tikus erat
kaitannya dengan fase bulan. Variasi yang dapat dijelaskan mengunakan tiga
komponen sebesar 98,59%. Komponen 1 menjelaskan 80,14%, komponen 2
sebesar 16,82% dan komponen 3 sebesar 1,63%. Hasil analisis menunjukkan
beberapa spesies mengelompok pada fase bulan tertentu. Dua fase bulan yang
memiliki peran penting bagi kemunculan tikus yaitu bulan baru dan bulan
purnama, jumlah individu lebih banyak ditemukan pada bulan baru sedangkan
jumlah spesies lebih banyak ditemukan pada bulan purnama.
Kata kunci : Tikus, distribusi, preferensi habitat, fase bulan.
vi
SUMMARY
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN. Distribution of Rats
(Rodentia, Muridae) in Bawakaraeng Mountain, South Sulawesi, Indonesia.
Supervised by BAMBANG SURYOBROTO and IBNU MARYANTO
Rats (Order Rodentia, Family Muridae) consists of five subfamilies which
one subfamily murinae, 129 genera and 584 species in the world. In Indonesia,
there are 40 genera and 156 species. Rats distribution and diversity are influenced
by environmental factors, they are vegetation density, climate, altitude, habitat
types, food sources, diseases, predation and habitat exploitation by humans.
Sulawesi is one of the island located in Indonesia and also one of the areas with
high species diversity, while family Muridae in South Sulawesi are poorly known.
This study aims to determine the rats composition and diversity, habitat
preferences and moon phases effect on the number of individual rats were
captured. Data analysis in this research is to determine the estimated number of
rats found each captured and principal component analysis to see the habitat
preferences as well as the correlation between the moon phases with a number of
rats individual were captured.
Specimen collection using two types of traps, they are cage trap and snap
trap and two types of bait that are coconut roasted and dried fish. Ten line transect
which contain 20 traps were placed in each habitat types. Captured rats
individuals were marking and put into 10% formalin for preserved.
A total four genera and 10 species of rodents were captured, they are
Rattus hoffmani, R. dommermani, R. exulans, Bunomys andrewsi, B.
chrysocomus, B. heinrici, Taeromys celebensis, T. hamatus, Paruromys
dominator, and Paruromys sp. The estimation species number that were found in
the mountain Bawakaraeng were calculated based on the number of species found
in 42 nights. The results of analysis explains that the estimation species number
that were reached about 11 species.
Shannon-Wiener diversity index showed a highest index value in the
primary forest (H '= 1.805) and the lowest value of diversity found in pine forests
(H' = 0.775). While the highest evennes value in primary forest (E = 0.8214) and
the lowest value in agroforestry (E = 0.6929). The relationship between species
and habitats using Principle Component Analysis (PCA) can be explained using
three component of 99% the total variance, they are 65.27% (PC1), 30.12% (PC2)
3.63% (PC3). The genera Rattus and Bunomys were correlated with lower
mountain forests they are mixed garden and agroforestry, while the genera
Taeromys and Paruromys were correlated with upper mountain forests, they are
secondary and primary forest.
Principal Component Analysis rats showed the activity closely associated
with the moon phases. Variation can be explained using three factors of 98.59%,
they are explains 80.14% (PC1), 16.82% (PC2) and 1.63% (PC 3). The analysis
showed some species were correlated with moon phases. Rats individuals
captured were commonly found in new moon and full moon, the number of
individuals are more commonly found in a new moon, while rats species number
were commonly found in full moon.
Keywords : Rat, Distribution, Habitat preferences, Moon phase.
vii
© Copy Right owned by IPB, year 2015
All right reserved
No part of this document may be reproduced or trasmitted in any form or by any
means, electronic, mechanical, copying, recording or otherwise, without prior
written permission from IPB.
ii
viii
DISTRIBUTION OF RATS (RODENTIA, MURIDAE)
IN BAWAKARAENG MOUNTAIN, SOUTH SULAWESI
INDONESIA
MUH. RIZALDI TRIAS JAYA PUTRA NURDIN
An Undergraduate Thesis
In partial fullfilment of Master Science degree in Animal
Bioscience
Faculty of Mathematics and Natural Science
GRADUATE SCHOOL
BOGOR AGRICULTURAL UNIVERSITY
BOGOR
2015
ix
External Member Supervisor Comitte : Dr Ir Dedy Duryadi Solihin, DEA
xi
FOREWORDS
All praise to Allah SWT for all the hope and give I have got this far. My study
and thesis research would not have been accomplished without the help of many
people. Special thanks to Dr. Bambang Suryobroto and Prof (Ris) Ibnu Maryanto
as supervisory committee, for all guidance and encouragement as well as
invaluable academic advices for the whole period of my study and research.
Thanks to Direktoral Jendral Pendidikan Tinggi (DIKTI) for Beasiswa Unggulan,
Goverment of Gowa, South Sulawesi, staff of Biology Laboratory Makassar
University, Tata Family and All staff of Zoology LIPI. My friends Husni
Mubarok, Agmal Qodri and Ellena Yusti thanks for help in the field. To all my
friends in BSH 2012 and Andika House crew Ariandi, Sunardi, Lukman, Yuzar,
Muh. Nur Kholis, Andi Baso Manguntungi, Kak Syamdi, and specially my best
friend Andi Dewi Rizka AM thanks for support and friendship. Further, I am
highly indebted to my beloved family parents, my Father Drs. H.Nurdin, My
Mother Hj. Sinarwati, and my sisters Risna Ekawati, Rezki Dwi Yanti, Refalinda
Maharani for their love and support who always inspire and encourage me for
higher education.
Bogor, February 2015
Muh. Rizaldi Trias Jaya Putra Nurdin
xii
TABLE OF CONTENTS
LIST OF TABLES
vi
LIST OF FIGURE
vi
LIST OF APENDIXES
vi
1 INTRODUCTION
Background
Aims
1
1
1
2 METHODS
Study Sites
Specimen Collection
Specimen Identification
Reproduction Status
Number of Rats in Relation of Moon Phase
Data Analysis
2
2
3
4
5
5
5
3 RESULTS AND DISCUSSION
RESULTS
Species Captured
Reproduction Status
Habitat Preferences
Number of Rats in Relation of Moon Phase
DISCUSSIONS
Species Captured
Habitat preferences
Number of Rats in Relation of Moon Phase
6
6
6
7
8
9
10
10
11
12
4 CONCLUSIONS
12
REFERENCES
APPENDIXES 1
APPENDIXES 2
APPENDIXES 3
APPENDIXES 4
APPENDIXES 5
BIOGRAPHY
12
15
18
21
22
23
30
xiii
LIST OF TABLES
1
2
3
4
Habitat type description in Bawakaraeng Mountain
Distribution of traps per habitat type
Total effort of rat species in various habitat types
Comparison of diversity and evenness index based on habitat type and
Altitude
5 Total variance and value principle component analysis
6 Total effort of rats species in moon phases
3
4
6
7
9
9
LIST OF FIGURES
1
2
3
4
5
6
7
Collecting specimens sites
Trap of rat
Morphology of rat
Rat morphology skull
Estimation number of rats
Principal Component Analysis (PC1, PC2, PC3) of Habitat Preferences
Principal Component Analysis (PC1, PC2, PC3) of Moon Phases
2
3
4
4
6
8
10
LIST OF APPENDIXES
1
2
3
4
5
Habitat types of rats
Morphology and skull of captured rats
Number of species an individuals per habitat
Total value axis principle component analysis
Rats specimen cataloged in LIPI Cibinong
15
18
21
22
23
1
1 INTRODUCTION
Background
Rat (Ordo Rodentia, family Muridae) consists of five subfamily, one of
them is murinae subfamily, includes 129 genera and 584 species that have been
discovered in the world (Musser and Carleton 2005). In Indonesia there are 40
genera and 156 rats species and some of them are endemic in certain areas
(Suyanto et al. 2002). They show great diversity in ecology, morphology,
behavior and life history strategies (Yihune and Bekele 2012). Rats occupy a wide
range of natural habitats, including forests and grasslands, agricultural landscapes,
villages and townships (Aplin et al. 2003). Rats formed vital components of
ecosystems, they interact extensively with their environments and their activities
have beneficial effects on other organisms in different ecosystems. Rats are
important dietary components for many carnivorous small mammal, raptors, and
reptile (Davies 2002).
Distribution and diversity of rats are affected by environmental factors
such as disease, predation, climate, altitude, type of habitat, food resources, and
habitat exploitation by humans (Johnson and Horn 2008; Heaney et al. 2005).
Many studies have documented that the distribution and diversity of rats decrease
with in creasing density of shrubs and trees (Rosenzweig and Winakur 1969).
Sulawesi is one of the islands located in Indonesia and also one of the are
as with high species diversity (Myers et al. 2000). Many mammalian fauna of
Sulawesi are specific because of very long period of isolation. The location of
Sulawesi is with in the area of Wallacea, the geography which for millions of
years ago were never fused with Sahuland and Sunda lands (Musser and
Dagosto1987). There are 47 species of rodents that widespreadly distributed in
Sulawesi (Suyanto et al. 2002).
Muridae Family in South Sulawesi is poorly known including information
on the number, distribution, and species has not been recorded . Bawakaraeng
mountain is the second highest mountain in the province of South Sulawesi, (S
05°19'01" and E 119°56'40" ), with a height at 2830 meters above sea level (m
asl) it is located ± 90 km from the city of Makassar. The forest type in the
mountain are lowland forest, lower montane forest (secondary) and upper
montane forests (primary) (Hasnawir et al. 2006). Despite the publications of
Musser and Dagosto (1987) and Suyanto et al. (1998) little is known regarding the
distribution of rat species in relation to vegetation, habitat, and altitude.
Aims
This study aims to determine the rats composition and diversity, habitat
preferences and relation between captured individual rat with the moon phases in
Bawakaraeng Mountain.
2
2 METHODS
Study site
This research was conducted for three months from September to
November 2013. There were five main types of habitat: Mixed agricultured
(1300-1499 m asl), Agroforestry (1500-1699 m asl), Pine forest (1700-1899 m
asl), Secondary forest (1900-2099 m asl), and Primary forest (2200 m asl) (Figure
shown appendix 1).
1
2
3
4
5
Figure 1. Specimen collection site (1) MA = Mixed Agricultured (1300-1499
masl);(S05 ° 15'049 "E119 ° 53'934"); (2) AF = Agroforestry 15001699 masl); (S05 ° 15'029 "E119 ° 53'56, 0"); (3) PiF = Pine forest
(1700-1899); (S05 ° 15'488'' E119 ° 54'530''); (4) SF = Secondary
forest (1900 - 2099 masl); (S05 ° 16'47'' E 119 ° 55'01''); (5) PF =
Primary forest (>2100 masl); (S 05 ° 17'12'' E 119 ° 55'48'').
3
Table 1. Habitat types description in Bawakaraeng mountain
No
Habitat Types
Elevation
( m asl)
1300-1499
1
Mixed
Agricultured
2
Agroforestry
1500-1699
3
Pine Forest
1700-1899
4
Secondary
Forest
1900-2099
5
Primary Forest
>2100
Description
The dominant vegetation which are
trees, shrubs, herbs, and flowering
plants. In this area were found a variety
of fruit plants, such as guava and
banana.
The dominant vegetation which are trees
and shrubs are grown around or among
crops or pastureland. It combines
agricultural and forestry to create more
diverse.
The dominant vegetation which are pine,
shrubs, herbs, and ferns. This area were
directly adjacent to forest plantation.
The forest area has a cliffs and
waterfalls. Vegetation in this habitat in
the form of fruit trees, ferns, shrubs, and
herbs.
The forest area has a cliffs, small caves
and river. Vegetation in this habitat
which are trees, ferns, shrubs, and herbs.
Specimen Collection
Captured rats using two types of traps are live traps made of wire with
dimensions of 28 × 12 × 12 cm and trap-flops are made of iron, each trap as many
as 100 traps, as the appeal we use two types of bait that is roasted coconut and
dried fish. Life and snap traps placed randomly with intervals 5 meters per trap
(Table 2). Rats were capture then taken manually, then put in bag for anesthesia.
Rats were given tagging (Labelling) with number of specimens that will provide
information in which location, altitude, date, month, year, gender, and age. The
morphology of the rats was measured using a digital caliper with a level of
accuracy of 0.001 mm. The next sample is preserved in formalin rats 10% to be
identified.
(a)
(b)
Figure 2. (a) Live trap, (b) Snap trap
4
Table 2. Distribution of traps per habitat
Habitat
Mixed Agricultured
Agroforestry
Pine Forest
Secondary Forest
Primary Forest
Total
Total Night
Sampling
17
13
4
3
5
42
Total
Trap
2000
1300
800
600
1000
5700
Specimens Identification
Rats were identified in the Museum Zoologicum Bogoriense (MZB),
Indonesian Institute of Sciences (LIPI), Bogor. Morphology measurement was
done with many variable, they are body weight (BW), head and body length
(HBL), tail length (T), hind foot length (HF), claw in middle finger length (C),
ear length (E) (Figure 3). The identification was done with identifying key by
Nagorsen (2002) and Suyanto (2002). Furthermore, comparison of the skull
between the samples with the rats sample in MZB, skull observed including; 1.
Skull Greatest Length (GSL), 2. braincase Width (BW), 3. zygomatic Breadth
(ZB), 4. Meso pterygoid Width (MPW), 5. Bulla Tymphani Length (BL), 6.
incisive foramina Breadth (IFB), 7. Ramus Angular Process (RAP), 8. Molar
Molar 1 to 3 (M1M3), 9. Molar 1Width (M1W), Molar 2 Width (M2W), and
Molar 3 Width (M3W), 10. Nasal Length (NL ), and 11. Height of braincase (HB)
(Figure 4).
Figure 3. Morphology of rat
5
Figure 4. Rat morphology skull
Reproduction Status
Male and female can be distinguished by observing the external
reproductive organs including the penis in male, vagina and mammary gland in
female rats. Pregnancy in female can be indentified by full and protruding
abdomen. Observations of reproductive condition in females were conducted by
dissecting the abdomen and calculating embryos from the uterus to the left and
right side. While, the male reproductive were observed by enlarged testes.
Number of Rats in Relation of Moon Phases
Number of individu were correlated to the moon phasesby calculatingthe
effort(number of individuals /night/traps) and each phases with Principle
Component Analisys.
Data Analysis
Estimation on species were analyzed by Estimates S 8 to discuss
differences between number of collected and expected species (Colwell and
Gotelli 2000). Shannon-Wiener’s and Evenness index (Magurran 2004), were
used to compare the diversity of rats in each habitat types. Reproduction status
and age categories were identified manually. Principle Component Analysis
(PCA) were categorized rats according to habitat preferences and its relation to
the moon phases using Paleontological Statisticsfor Windows (PAST).
6
3 RESULT AND DISCUSSIONS
RESULTS
Species captured
A total of 227 individuals, four genera and 10 species were trapped in
5700 traps during 42 nights (Appendix 3). The overall trapping success as
follows: Rh= Rattus hoffmani (Matschie 1901), Rd= R. Dommermani (Thomas
1921), Re= R. Exulans (Peale 1848), Ba= Bunomys andrewsi (Allen 1911), Bc=
B. chrysocomus (Hoffmann 1887), Bh= B. Heinrichi (Tate and Archbold 1935),
Tc= Taeromys celebensis (Gray 1867), Th= T. hamatus (Miller and Hollister
1921), Pd= P. dominator (Thomas 1921), and Psp= Paruromys sp. (undescribed)
(figure shown appendix 2).
Table 3. Total effort of rat species in various habitat types
MA
Altitude
(m asl)
1300
Habitat
Rh*
Rd*
Re
Ba*
Bc*
Bh*
Tc*
Th*
Pd*
Psp*
5.5
12.5
24.5
0.5
0.0
0.0
0.0
0.0
0.0
0.0
AF
1500
10.0
3.1
27.7
3.1
0.8
2.3
2.3
1.5
0.0
0.0
PiF
1700
3.8
0.0
20.0
0.0
3.8
0.0
0.0
0.0
0.0
0.0
SF
1900
18.3
1.7
6.7
3.3
3.3
3.3
0.0
0.0
0.0
0.0
2200
13.0
4.0
3.0
2.0
PF
Description: Habitat abbreviation refer to figure 1.
4.0
2.0
1.0
0.0
1.0
1.0
R. hoffmani found in all habitat types those are mixed agricultured,
agroforestry, pine forest, secondary forest, primary forest. The highest individual
number were found in the secondary forest and primary forest. While, R.
dammermani were found in four habitat types and the highest number were found
in mixed. R. exulans found in all habitat type and the highest number were found
in agroforestry and Mixed Agricultured.
B. andrewsi were found in four habitat types, including mixed
agricultured, agroforestry, secondary forest, primary forest.The highest in dividual
number found in secondary forest. B. chrysocomus were found in four habitat
types and the highest individual number were found in the primary forest (2200 m
asl). B. Heinrici were found in three habitat types, they are agroforestry,
secondary forest, and primary forest, and the highest individual number were
found in secondary forest. Individual number commonly found near the river
flow. The lowest individual number were found in agroforestry and primary forest
namely T. Celebensis, T. hamatus, futhermore P. dominator and Paruromys sp.
Estimation of total rats individuals number could be counted based on
number of individuals captured during 42 nights. Total number of species exist in
Bawakaraeng mountain was estimated by Colwell and Gotelli (2000) method.
Figure 5 shows the value of rat species estimation. Estimation of rats species
number during 42 nights were 11 species. Sobs (Mao Tau) is the total number of
species that was captured in this study. Jack 2 mean value is the second order
jacknife richness estimator of species number. Sampling effort in this study were
7
reach maximal, because only one species were estimated not captured yet, the rats
were captured included 10 species.
Figure 5. Estimation curve number of rats individuals, sobs (Mao Tau) is sample
observed, Jack 2 Mean is species estimation number.
Shannon-Wiener diversity index showed the high and low index values in
five different habitats. PF were showed the highest values (H '= 1.805) and PF
were the lowest (H' = 0.775). Evenness values were highest in the PF (E = 0.77)
and the lowest value in the AF (E = 0.6511), but the evenness value of five habitat
types was not significantly difference (E = 0.43 – 0.77).
Table 4. Comparison of diversity and evenness index based on habitat type and
altitude (m above sea level) (N = number of species captured, Sum =
total collected).
S
N
Evenness
ShannonWeiner
MA
(1300-1499)
4
86
0.5806
1.002
AF
(1500-1699)
8
66
0.6511
1.441
PiF
(1700-1899)
3
22
0.4339
0.775
SF
(1900-2099)
6
22
0.6901
1.451
PF
(2200)
9
31
0.77
1.805
Reproduction Status
The number of rats capture by sex were 114 male (50.22%) and 113
female (49.77%). It has been recorded that 30 individual females who are
pregnant and 83 non-pregnant individuals, calculated based on the number of
embryos individuals who have been pregnant, Rattus hoffmani consists of 9
individuals and has a total of 40 embryos (17 left, 23 right). Rattus dammermani
consists of 6 individuals and has a total of 19 embryos (10 left, 9 right), Rattus
exulans consists of 12 individuals and has a total of 38 embryos (17 left, 21 right),
Bunomys andrewsi consists of two individuals with a total of 6 embryos (2 left, 4
right), Bunomys chrysocomus consists of two individuals with a total of 4
embryos (2 left, 2 right). In addition, male rats that had a reproduction period are
47 individuals with has a Outside testes and 67 individuals with has inside testes.
8
Habitat Preferences
Principle Component Analysis (PCA) showed variation in three factors,
total varians 75.23%. First component showed 50.38%, and second component
24.85% (Figure 6). Analysis results suggested some species were clumped into
certain habitat. R. dammermani and R. exulans were greatly related to
Agroforestry (1500 m asl). Dominantion of these species populations would be
greater in habitat which more than 1500 m asl altitude. R. dammermani prefer to
the mixed agricultured (1300-1500 m asl). In contrast, R. exulans prefer to scrub
and secondary forest. R. hoffmani has opposite dominantion pattern with R.
exulans. The dominantion would be greater if population in Montane, Sub
Montane and higher altitute habitat were changed into secondary forest. Whereas,
dominantion would be lower if species occured in less than 1500 m asl.
B. andrewsi and B. Hainrichi were sympatrical in Montane forest (> 1800
m asl), especially in secondary forest. While B. Chysocomus has greater habitat
preferences than B. andrewsi and B. heinrichi, from agroforestry (1500 m asl),
pine forest (1700 m asl), and primary forest (2200 m asl). Both T. hamatus and T.
chrysocomus were prefer Montane forest in lower altitude (> 1500 m asl). T.
celebensis were still found in primary forest (2200 m asl). P.dominator and
Paruromys sp. were mostly sympatrical and mostly found in 2200 m asl altitude.
Figure 6. Principle Component Analysis ( PC1,PC2, and PC3 )
9
Table 5. Total variance and value principle component analysis
Eigenvalue
% variance
Habitat
MA
AF
PiF
SF
PF
PC1
6.5494
50.38
Axis 1
-2.5107
0.71764
-2.7783
1.5075
3.0639
PC2
3.23044
24.85
Axis 2
0.14481
2.9907
-1.235
-0.3913
-1.5092
PC3
1.89559
14.581
Axis 3
1.3167
0.03132
-0.7665
-1.8862
1.3047
PC4
1.32458
10.189
Axis 4
-1.3205
0.68284
1.2812
-1.1091
0.46553
Number of Rats in Relation of Moon Phases
A total of 24 nights sampling based on moon phases and 5700 traps, effort
of each species were showed in (Table 6). Moon phases divided into five phases
including, A = New Moon, B = Waning Crescent, C = First Quarter, D = Waning
Gibbous, and E = Full Moon.
Table 6. Total effort of rats speciesin moon phases
Moon
Phases
Rh
Rd
Re
Ba
Bc
Bh
Tc
Th
Pd
Psp
A
9.09
B
8.57
2.73
41.82
2.73
0.91
0.91
0.91
0.00
0.00
0.00
1.43
16.19
0.48
1.90
0.95
0.00
0.48
0.00
0.00
C
5.00
2.50
20.00
2.50
0.00
0.00
5.00
0.00
0.00
0.00
D
13.08
16.92
7.69
1.54
2.31
2.31
0.77
0.00
0.77
0.00
E
5.00
6.25
12.50
2.50
2.50
1.25
0.00
1.25
0.00
1.25
Description: : A= New Moon, B= Waxing Crescent, C= First quarter, D= Waning gibbous, E=
Full moon (Spesies abreviation refer to Table 1)
PCA showed number of rats trapped were related to moon phases.
Variation can be explained using three factors in 98.59% total. First component
showed 80.14%, second component 16.82% and third component 1.63% of total
varians. Some species were clumped in certain moon phases. R. dammermani and
R. hoffmani has a great related to waning gibbous. Dominantions of R.
dammermani and R. hoffmani would be lower in waxing crescent and full moon
and first quarter, respectively. In contrast, R. exulans were mostly found in new
moon and have a great number in first quarter. Then, decreased in waning
gibbous.
B. andrewsi were related to new moon, while B. chrysocomus and B.
heinrichi are mostly found in wanning gibous. Dominantion of B. chrysocomus
were increased until full moon. T. celebensis were related to new moon, inspite of
dominantion of this species were mostly found in first quarter. Futhermore, T.
hamatus, P. dominator, and Paruromys sp. were sympatrical in full moon. Two
moon phases has an important role in number of rats, those are new moon and full
moon. Number of rat individual were greater in new moon, whereas the number of
rat species were greater in full moon.
10
Figure 7. Principle component analysis of individual rats number in relation to
moon phase. (Abbreviations of moon phase refer to Table 6).
DISCUSSIONS
Species Captured
Two components of diversity index were used in this study those are
Shannon-Weiner and evenness. Both index were not always showed the same
trend in diversity. The number of rat individual were not proportional to the
number of rats species. Peet (1974) noted that the Shannon-Weiner index is very
sensitive to changes species abundance. The highest number of rat species were
found in the primary forest (2200 m asl), about 9 species were found. It suspected
because natural environmental conditions. While, the lowest species number were
found in the pine forest (1700 m asl) that were found only three species and
suspected because shrubs and food availability were decreased. Maryanto and
Yani (2003) reported that rat species in Lore Lindu National Park in total 20
species were captured, of which 18 species endemic to Sulawesi, diversity index
11
showed a stable value at in altitude range 900 to1199 (m asl) in total 14 species
and decrease with altitude 2100 m asl in total 8 species in Lore Lindu National
Park, Central Sulawesi.
Very low capture rate caused trouble to document patterns of association
in the mountain Bawakaraeng. The success of the overall traps around 3.9%, with
an average installation of 200 traps per night (a total of 5700 trap). The capture
rate is comparable with the figures reported by Maryanto and Yani (2003) of the
Lore Lindu National Park, Central Sulawesi where the successful arrest of about
1%, with an average of 104 traps were installed on every night. The success rate
of this arrest does not seem so low when compared with other tropical Asian
studies. Medway (1972) reported on Mount Benom, West Malaysia, at an altitude
of 300-2400 m asl wear 50 per night trap used to catch any small mammals (Total
5777 trap). Heaney et al. (1989) reported on Leyte Island, Philippines, at 300-900
m above sea level, using 30 traps per night (Total 3485 trap).
Estimaton of rats is calculated in order to determine the number of species
that have not been obtained and compared with that obtained during the study
species. Some factors that suspected causing other rats species were not captured
including time sampling, trap efficiency. It is possibility to get 11 species of rats if
adding sampling duration. Beside that, the highest number rats individuals
captured were in snap trap than cage trap. Leal (1990) reported that snap trap that
used to trapped small mammals more effective than cage trap.
Habitat Preferences
Rats are very active animals and can be found in various types of habitats.
Rats were intimately associated with foraging patterns and environmental factors.
In this study, we found two genera that were adaptive to the altered habitat,
including Rattus and Bunomys. It because of both genera found at lowest to
highest altitude. Some species Taeromys and Paruromys were also found in
certain area. Rattus are usually found in various habitat types, including in
disturbed or agricultural area. In Philippines, Rattus were found in all altitude at
different habitat such as agricultural, tropical and sub-tropical forest, pine forest,
also villages (Barbehenn et al. 1973).
Bunomys commonly found in primary forest and also be found in the little
altered habitat. These genera mostly found at the river side, which the frogs, small
lizards and earthworms as the diets (Musser and Carleton 2005). On the study of
Sulawesi, Musser (1991) showed the widespread and common species of rats
were R. hoffmani. These species were also distributed in all habibat types of
Bawakaraeng mountain. In addition, these species abundant in 1900 to 2200 m
asl. In the Lore Lindu National Park, Bunomys penitus, Paruromys dominator,
Margaretamys elegans, Maxomys wattsi and Melasmothrix naso found in 600 to
1800 m asl (Musser and Dagosto 1987). Genus Taeromys found in Sulawesi at
1.200 m asl, and can be found in the lowland tropical rain forest (Musser and
Carleton 2005). P. dominator, were endemic to Sulawesi, this species is only
found in the tropical mountain, never found in the lowlands (Musser and Carleton
2005).
12
Number of Rats in Relation of Moon Phases
Rats make foraging decisions by balancing the demands for energy gain,
mating and other needs, to identify variations in the risk of predators, nocturnal
rodents can use the moon as alight cue (Nathan et al. 2013). Animals are active at
night (nocturnal) have behaviours and activities related to changing light
conditions, the light of the moon cycle (Lang et al. 2005). Categorized into five
cycles of the moon phases is waning crescant, new moon, first quarter, Waning
Gibbous, and full moon (Lang et al. 2005).
4 CONCLUSIONS
A total of 227 individual rats (Muridae) were captured in five altitude and
different habitat types in Bawakaraeng Mountain, South Sulawesi used cage traps
and snap trap. habitat types diversity of rats in the mountains above higher than
Mixed Agricultured, agroforestry, pine forest and secondary forest. Shannon
Wiener diversity decreased weredepended to species richness at sites. The number
of rats captured by sex were 114 male rats (50.22%) and 113 female rats
(49.77%). Habitat preferences indicate that most species prefer toprimary forests
and agroforestry. The relationship between rats behaviour and moon phases
showed that the behavior rats out of the nest was higher in the new moon phases
than full moon phases.
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Corbet GB, Hill JE. 1992. The Mammals of the Indomalayan Region. A
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Colwell RK, Gotelli JN. 2000. Estimates-statistical estimation of species richness
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15
APPENDIXES 1
1. Habitat types of rats in Bawakaraeng mountain
Mixed Agricultured (1300-1499 m asl)
Agroforestry (1500-1699 m asl)
16
Pine Forest (1700-1899 m asl)
Secondary Forest (1900-2099 m asl)
17
Primary Forest (>2200 m asl)
18
APPENDIXES 2
2. Morphology and Skull of captured rats in Bawakaraeng Mountain
Rattus hoffmani
Rattus exulans
Rattus dammermani
19
Bunomys andrewsi
Bunomys chrysocomus
Bunomys heinrichi
20
Taeromys celebensis
Taeromys hamatus
Paruromys dominator
21
APPENDIXES 3
3. Number of species an individuals per habitat
Lokasi
Jumlah Malam
Jumlah Perangkap
Rattus hoffmani
Rattus dommermani
Rattus exulans
Bunomys andrewsi
Bunomys chrysocomus
Bunomys heinrichi
Taeromys celebensis
Taeromys hamatus
Paruromys dominator
Paruromys sp
Total Individu
MA
AF
PiF
SF
PF
Total
17
2000
11
25
49
1
0
0
0
0
0
0
86
13
1300
13
4
36
4
1
3
3
2
0
0
66
4
800
3
0
16
0
3
0
0
0
0
0
22
3
600
11
1
4
2
2
2
0
0
0
0
22
5
1000
13
4
3
2
4
2
1
0
1
1
31
42
5700
51
34
108
9
10
7
4
2
1
1
227
22
APPENDIXES 4
4. Total value axis principle component analysis
Parameter Axis 1
S
0.3591
E
0.3613
SW
0.383
Rh
0.3282
Rd
-0.1129
Re
-0.2715
Ba
0.3088
Bc
0.1498
Bh
0.3315
Tc
0.1775
Th
0.06125
Pd
0.2615
Psp
0.2615
Axis 2
0.1478
0.03907
0.04117
-0.0102
0.06991
0.3854
0.2611
-0.4034
0.1354
0.4098
0.5175
-0.2612
-0.2612
Axis 3
0.1884
0.1619
0.1248
-0.2916
0.5051
0.1093
-0.2527
-0.278
-0.3182
0.1791
0.00924
0.3848
0.3848
Axis 4
0.1155
-0.2616
-0.0561
-0.317
-0.5611
0.106
-0.1609
0.3696
-0.1489
0.379
0.2882
0.1965
0.1965
23
APPENDIXES 5
3. Rat specimens catalogue in LIPI Cibinong
Origin
Sex
Age
Specimen
Number of
catalogue LIPI
Rattus hoffmani
Mixed Agricultured
Female
Adult
37042
MR2
Rattus exulans
Mixed Agricultured
Male
Adult
37093
25/09/2013
MR3
Rattus dommermani
Mixed Agricultured
Female
Adult
37210
25/09/2013
MR4
Rattus exulans
Mixed Agricultured
Female
Adult
37094
25/09/2013
MR5
Rattus exulans
Mixed Agricultured
Male
Adult
37095
25/09/2013
MR6
Rattus exulans
Mixed Agricultured
Female
Adult
37096
25/09/2013
MR7
Rattus exulans
Mixed Agricultured
Male
Adult
37097
25/09/2013
MR8
Rattus exulans
Mixed Agricultured
Male
Adult
37098
25/09/2013
MR9
Rattus hoffmani
Mixed Agricultured
Female
Adult
37043
26/09/2013
MR10
Rattus exulans
Mixed Agricultured
Female
Adult
37099
26/09/2013
MR11
Rattus exulans
Mixed Agricultured
Male
Adult
37100
26/09/2013
MR12
Rattus exulans
Mixed Agricultured
Male
Adult
37101
26/09/2013
MR13
Rattus exulans
Mixed Agricultured
Female
Adult
37102
26/09/2013
MR14
Rattus exulans
Mixed Agricultured
Male
Adult
37103
26/09/2013
MR15
Rattus exulans
Mixed Agricultured
Male
Adult
37104
26/09/2013
MR16
Rattus exulans
Mixed Agricultured
Female
Adult
37105
26/09/2013
MR17
Rattus exulans
Mixed Agricultured
Male
Adult
37106
26/09/2013
MR18
Rattus exulans
Mixed Agricultured
Female
Adult
37107
26/09/2013
MR19
Rattus hoffmani
Mixed Agricultured
Male
Adult
37044
27/09/2013
MR20
Bunomys andrewsi
Mixed Agricultured
Male
Adult
37235
27/09/2013
MR21
Rattus exulans
Mixed Agricultured
Male
Adult
37108
27/09/2013
MR22
Rattus exulans
Mixed Agricultured
Female
Adult
37109
27/09/2013
MR23
Rattus exulans
Mixed Agricultured
Male
Adult
37110
27/09/2013
MR24
Rattus exulans
Mixed Agricultured
Female
Adult
37111
27/09/2013
MR25
Rattus exulans
Mixed Agricultured
Male
Adult
37112
27/09/2013
MR26
Rattus exulans
Mixed Agricultured
Female
Adult
37113
27/09/2013
MR27
Rattus exulans
Mixed Agricultured
Female
Adult
37114
27/09/2013
MR28
Rattus exulans
Mixed Agricultured
Male
Adult
37115
27/09/2013
MR29
Rattus exulans
Mixed Agricultured
Male
Adult
37116
27/09/2013
MR30
Rattus exulans
Mixed Agricultured
Female
Adult
37117
27/09/2013
MR31
Rattus exulans
Mixed Agricultured
Female
Juvenile
37118
27/09/2013
MR32
Rattus exulans
Mixed Agricultured
Male
Juvenile
37119
29/09/2013
MR33
Rattus hoffmani
Pine Forest
Female
Adult
37045
29/09/2013
MR34
Bunomys chrysocomus
Pine Forest
Male
Adult
37404
Dates
Capture
No
Spesimen
23/09/2013
MR1
25/09/2013
Nama Specimen
24
29/09/2013
MR35
Rattus exulans
Pine Forest
Male
Adult
37120
29/09/2013
MR36
Rattus exulans
Pine Forest
Female
Adult
37121
30/09/2013
MR37
Rattus exulans
Pine Forest
Male
Adult
37122
30/09/2013
MR38
Rattus exulans
Pine Forest
Male
Adult
37123
30/09/2013
MR39
Rattus exulans
Pine Forest
Male
Subadult
37124
01/10/2013
MR40
Rattus hoffmani
Pine Forest
Male
Adult
37046
01/10/2013
MR41
Bunomys chrysocomus
Pine Forest
Female
Adult
37405
01/10/2013
MR42
Rattus hoffmani
Pine Forest
Male
Adult
37047
01/10/2013
MR43
Rattus exulans
Pine Forest
Female
Adult
37125
01/10/2013
MR44
Rattus exulans
Pine Forest
Male
Adult
37126
01/10/2013
MR45
Rattus exulans
Pine Forest
Male
Adult
37127
01/10/2013
MR46
Rattus exulans
Pine Forest
Male
Adult
37128
01/10/2013
MR47
Rattus exulans
Pine Forest
Male
Adult
37129
01/10/2013
MR48
Rattus exulans
Pine Forest
Female
Adult
37130
01/10/2013
MR49
Rattus exulans
Pine Forest
Female
Adult
37131
01/10/2013
MR50
Rattus exulans
Pine Forest
Male
Adult
37132
01/10/2013
MR51
Bunomys chrysocomus
Pine Forest
Male
Adult
37406
05/10/2013
MR52
Rattus exulans
Pine Forest
Male
Adult
37133
05/10/2013
MR53
Rattus exulans
Pine Forest
Male
Adult
37134
05/10/2013
MR66
Rattus exulans
Pine Forest
Female
Adult
37135
08/10/2013
MR54
Rattus dommermani
Secondary Forest
Male
Adult
37211
08/10/2013
MR55
Rattus hoffmani
Secondary Forest
Male
Adult
37048
08/10/2013
MR56
Rattus hoffmani
Secondary Forest
Female
Adult
37049
08/10/2013
MR57
Rattus hoffmani
Secondary Forest
Female
Adult
37050
08/10/2013
MR58
Rattus hoffmani
Secondary Forest
Female
Adult
37051
08/10/2013
MR59
Rattus hoffmani
Secondary Forest
Male
Adult
37052
08/10/2013
MR60
Rattus hoffmani
Secondary Forest
Female
Adult
37053
08/10/2013
MR61
Bunomys andrewsi
Secondary Forest
Female
Adult
37236
08/10/2013
MR62
Rattus hoffmani
Secondary Forest
Male
Adult
37054
08/10/2013
MR63
Rattus hoffmani
Secondary Forest
Female
Adult
37055
08/10/2013
MR64
Rattus exulans
Secondary Forest
Female
Adult
37136
08/10/2013
MR65
Rattus exulans
Secondary Forest
Female
Adult
37137
09/10/2013
MR67
Rattus hoffmani
Secondary Forest
Male
Adult
37056
09/10/2013
MR68
Bunomys chrysocomus
Secondary Forest
Male
Adult
37407
09/10/2013
MR69
Rattus exulans
Secondary Forest
Female
Adult
37138
12/10/2013
MR70
Bunomys andrewsi
Secondary Forest
Male
Adult
37413
12/10/2013
MR71
Bunomys heinrichi
Secondary Forest
Male
Adult
37285
12/10/2013
MR72
Rattus hoffmani
Secondary Forest
Female
Adult
37057
12/10/2013
MR92
Rattus hoffmani
Secondary Forest
Female
Adult
37058
12/10/2013
MR93
Bunomys heinrichi
Secondary Forest
Female
Subadult
37290
12/10/2013
MR94
Bunomys chrysocomus
Secondary Forest
Male
Adult
37408
25
12/10/2013
MR95
Rattus exulans
Secondary Forest
Male
Juvenile
37139
13/10/2013
MR73
Rattus dommermani
Primary Forest
Male
Adult
37212
13/10/2013
MR74
Taeromys celebensis
Primary Forest
Female
Adult
37421
13/10/2013
MR75
Paruromys dominator
Primary Forest
Female
Adult
37423
13/10/2013
MR76
Rattus hoffmani
Primary Forest
Female
Adult
37059
13/10/2013
MR77
Rattus hoffmani
Primary Forest
Female
Adult
37060
13/10/2013
MR78
Rattus hoffmani
Primary Forest
Male
Adult
37061
13/10/2013
MR79
Bunomys heinrichi
Primary Forest
Female
Adult
37291
13/10/2013
MR80
Rattus dommermani
Primary Forest
Female
Adult
37213
13/10/2013
MR81
Rattus hoffmani
Primary Forest
Female
Adult
37062
13/10/2013
MR82
Rattus dommermani
Primary Forest
Male
Adult
37214
13/10/2013
MR83
Rattus hoffmani
Primary Forest
Female
Adult
37063
13/10/2013
MR84
Bunomys chrysocomus
Primary Forest
Female
Adult
37409
13/10/2013
MR85
Rattus dommermani
Primary Forest
Female
Adult
37215
13/10/2013
MR86
Rattus hoffmani
Primary Forest
Female
Adult
37064
14/10/2013
MR87
Rattus exulans
Primary Forest
Male
Adult
37140
14/10/2013
MR88
Rattus hoffmani
Primary Forest
Female
Adult
37065
14/10/2013
MR89
Rattus hoffmani
Primary Forest
Male
Adult
37066
14/10/2013
MR90
Rattus hoffmani
Primary Forest
Male
Adult
37067
14/10/2013
MR91
Bunomys chrysocomus
Primary Forest
Female
Adult
37286
15/10/2013
MR96
Rattus hoffmani
Primary Forest
Male
Adult
37068
15/10/2013
MR97
Paruromys sp
Primary Forest
Female
Adult
37426
15/10/2013
MR99
Rattus hoffmani
Primary Forest
Female
Adult
37069
15/10/2013
MR100
Bunomys andrewsi
Primary Forest
Female
Adult
37414
15/10/2013
MR101
Rattus exulans
Primary Forest
Female
Adult
37141
16/10/2013
MR102
Bunomys andrewsi
Primary Forest
Male
Adult
37415
16/10/2013
MR103
Bunomys chrysocomus
Primary Forest
Male
Adult
37410
16/10/2013
MR104
Bunomys heinrichi
Primary Forest
Male
Adult
37287
16/10/2013
MR105
Bunomys chrysocomus
Primary Forest
Male
Adult
37411
16/10/2013
MR106
Rattus hoffmani
Primary Forest
Female
Adult
37070
16/10/2013
MR107
Rattus exulans
Primary Forest
Female
Subadult
37142
17/10/2013
MR108
Rattus hoffmani
Primary Forest
Female
Adult
37071
01/11/2013
MR98
Bunomys heinrichi
Agroforestry
Male
Adult
37419
01/11/2013
MR109
Suncus murinus
Agroforestry
Female
Adult
37427
01/11/2013
MR110
Rattus exulans
Agroforestry
Female
Adult
37143
01/11/2013
MR111
Suncus murinus
Agroforestry
Female
Adult
37428
01/11/2013
MR112
Rattus hoffmani
Agroforestry
Female
Adult
37072
01/11/2013
MR113
Rattus exulans
Agroforestry
Male
Adult
37144
01/11/2013
MR114
Bunomys heinrichi
Agroforestry
Female
Adult
37289
02/11/2013
MR115
Suncus murinus
Agroforestry
Male
Adult
37429
02/11/2013
MR116
Suncus murinus
Agroforestry
Female
Adult
37430
26
02/11/2013
MR117
Rattus exulans
Agroforestry
Male
Adult
37145
04/11/2013
MR118
Taeromys celebensis
Agroforestry
Female
Adult
37292
04/11/2013
MR119
Bunomys heinrichi
Agroforestry
Female
Adult
37420
04/11/2013
MR120
Rattus dommermani
Agroforestry
Female
Adult
37216
04/11/2013
MR121
Rattus hoffmani
Agroforestry
Male
Adult
37073
04/11/2013
MR122
Rattus exulans
Agroforestry
Male
Adult
37146
04/11/2013
MR123
Rattus exulans
Agroforestry
Male
Adult
37147
04/11/2013
MR124
Suncus murinus
Agroforestry
Female
Adult
37431
04/11/2013
MR125
Rattus exulans
Agroforestry
Male
Adult
37148
04/11/2013
MR126
Suncus murinus
Agroforestry
Female
Adult
37432
04/11/2013
MR127
Suncus murinus
Agroforestry
Male
Adult
37433
04/11/2013
MR128
Rattus exulans
Agroforestry
Male
Adult
37149
04/11/2013
MR129
Rattus exulans
Agroforestry
Male
Adult
37150
04/11/2013
MR130
Rattus exulans
Agroforestry
Male
Adult
37151
04/11/2013
MR131
Rattus exulans
Agroforestry
Male
Adult
37152
04/11/2013
MR132
Suncus murinus
Agroforestry
Male
Adult
37434
05/11/2013
MR133
Rattus hoffmani
Agroforestry
Female
Adult
37074
05/11/2013
MR134
bunomys andrewsi
Agroforestry
Male
Adult
37288
05/11/2013
MR135
Rattus hoffmani
Agroforestry
Male
Adult
37075
05/11/2013
MR136
Bunomys chrysocomus
Agroforestry
Male
Adult
37412
05/11/2013
MR137
Rattus exulans
Agroforestry
Female
Adult
37153
05/11/2013
MR138
Rattus hoffmani
Mixed A