Materials and methods Directory UMM :Data Elmu:jurnal:L:Livestock Production Science:Vol65.Issue1-2.Jul2000:

¨ 108 S . Østergaard, Y.T. Grohn Livestock Production Science 65 2000 107 –118 roughage ratio in the feeds given to the cows. Energy complex into analyses of some underlying mecha- is the nutrient for which intake is most closely nisms. Within homogenous feeding management related to the level of milk production Bath, 1985 types, various feeding measures may be defined and is, consequently, widely used in systems for independently of feed intake, such as the concentrate predicting milk production Kaustell et al., 1997 to roughage ratio for cows fed a TMR. In this study, and in relation to profitability in dairy herds Van- such measures were defined to be studied as potential dehaar, 1998. Decisions relating to concentrate risk factors for diseases. By supplementing such feeding also might affect metabolic and presumed analysis with an estimation of feed intake as a feeding-related disorders Veenhuizen et al., 1991; disease specific function of day of diagnosis may Geishauser, 1995; Gustafsson et al., 1995; Shaver, explain some of the ‘feeding–health’ complex. Con- 1997. Since, significant economic loss may be sequently, we addressed such analyses for decreased associated with incidence of metabolic disorders rumen motility, enteritis, ketosis, and left-displaced Kossaibati and Esslemont, 1997, the relationship abomasum LDA. between feeding and diseases may be important for The purposes of this study were 1 to test the production in a dairy herd. Unfortunately, the whether odds of metabolic disorders varied accord- relationships between feeding of concentrates and ing to concentrate management in the early lactation, metabolic disorders are poorly quantified — pre- and 2 to test whether metabolic disorders were sumably because of the lack of detailed recording related to either DMI of concentrates fed separately from the individual cow Østergaard and Sørensen, from roughages or total DMI, both, in the three 1998. weeks before and the 3 weeks after the clinical Cows on the same diet including roughages ad diagnosis was made. libitum, may differ in concentrate DMI and in concentrate to roughage ratio, due to variations in feed preference, intake capacity, and presentation of

2. Materials and methods

concentrates such as separately or mixed with roughage. Also, associations between concentrate 2.1. The herds and lactations DMI and roughage DMI and metabolic disorders, might vary according to when the DMIs are mea- Data for this retrospective study originate from sured in relationship to the date of diagnosis. These three research herds of the Danish Institute of facts call for data with frequently recorded feed Agricultural Sciences, Denmark, between April 1985 intake for each individual cow, which is very costly and August 1997 The breeds and parities are shown to fulfil simultaneously with the demand for many in Table 1. Except during the periods where cows observations on cows due to the relatively low had access to summer pasture two herds, the incidence of feeding related diseases. However, these milking herds were kept in tie stalls. Feedstuffs demands have been fulfilled in the data available for offered and refused except pasture were measured this study. These data have been recorded during 12 daily for each cow. Because ration analyses were years in three Danish research herds. These herds available, it was possible to calculate weekly or had records on weekly or bi-weekly individual-cow bi-weekly, the total concentrate and roughage DMIs DMIs for all concentrates and most roughages for each cow for at least 168 days in milk DIM. exception: summer pasture in two herds, on the Throughout this study we used feed intake measures manner of feeding the concentrates within a total i.e. what the cows actually eat as opposed to mixed ration TMR, entirely separate from measures of what the cows were offered. Hay, straw roughage, or partly separate from roughage, and on and feedstuffs with dry matter , 70 was defined to diagnoses of clinical disorders. be roughages. Other feedstuffs were defined to be The fact that an analysis of the effect of feeding concentrates. It was also possible to identify the DMI on disease should control for feeding management of concentrates fed separately from roughages rather and feed intake as a disease specific function of day than fed, e.g. within a TMR and of roughages of diagnosis made us split-up the study of the except pasture fed separately from concentrates. If ¨ S . Østergaard, Y.T. Grohn Livestock Production Science 65 2000 107 –118 109 Table 1 Number of lactations by herd, breed, and parity 1856 total cows with 3676 total lactations, three Danish dairy-research herds, 1985 to 1997 Breed Parity Number of lactations Herd I Herd II Herd III Total Danish black and white 1 224 762 184 1170 2 101 533 131 765 . 2 54 623 158 835 Danish jersey 1 136 – – 136 2 46 – – 46 . 2 23 – – 23 Danish red 1 232 50 – 282 2 81 39 – 120 . 2 31 29 – 60 Danish red and white 1 14 – – 14 2 11 – – 11 Crossbreed dairy cows 1 – 95 1 96 2 – 71 – 71 . 2 – 47 – 47 All breeds All 953 2249 474 3676 roughages and concentrates were only fed separately, The order in which the diagnoses are mentioned the general strategy was to feed roughages ad above indicates this ranking. libitum, whereas concentrates were fed as a set We chose not to study milk fever because it occurs amount regardless of test-day milk yields of the so soon after parturition that post-parturient feeding individual cow. our interest could not logically be a risk factor. A uniform procedure of making a diagnosis was Only four right-displaced abomasa were recorded, used in all of the three herds. All diseases were consequently, we could not investigate that disorder. diagnosed and treated by a veterinarian. The cows Cows were typically being used in various trials were not routinely vetted. If the stockmen noted while the data we used was being recorded. If cows something wrong, then a veterinarian was sent for. were assigned to trials unlikely to affect feeding and At each disease case, a single diagnosis was made metabolic disorders, we did not take it into account and recorded by the veterinarian, according to a e.g. trials of milking management or of animal standard protocol of disease diagnoses. handling. Most cows were only on a single herd The LDA diagnosis was entrapment of the en- trial between parturition and 168 DIM. In all cases larged fluid- or gas-filled abomasum high in the left we only accounted for the initially-assigned trial in abdominal cavity. Ketosis was diagnosed by using any lactation in our study. If a cow was not assigned clinical signs combined with a test on a milk sample. to a trial before 168 DIM, a dummy value specific Enteritis was diagnosed primarily by the presence of for the herd-year was used. In total, the lactations we diarrhoea, which in some cases could be bloody. used and trials which we accounted for included 71 Cows with enteritis were typically feverish. De- trials and 230 treatment groups. creased rumen motility was diagnosed if rumen contractions were considered significantly reduced. 2.2. Data exclusions and subsets of the data Cows with decreased rumen motility were typically not feverish. Data from fistulated, intensively managed cows Some of the clinical signs related to these diag- were excluded. Data from weeks where cows had noses could be related to more than a single diag- access to summer pasture were excluded from any nosis. Generally, those relatively less well-defined analyses that required measures of roughage DMI. diagnoses were made only if a better-defined diag- Data were used only from the first 168 DIM, for nosis could not be made, based on the clinical signs. three reasons. Firstly, as stated above, most lacta- ¨ 110 S . Østergaard, Y.T. Grohn Livestock Production Science 65 2000 107 –118 tions were involved in only a single trial before 168 all of the total DMI was fed between parturition and DIM. Secondly, the disorders we studied were 42 DIM as a TMR and in which the cow did not diagnosed primarily in early or mid-lactation. Third- have access to summer pasture early on in that ly, when concentrates and roughages were fed separ- lactation. This subset of the data was used to study ately, the feeding plan for concentrates tended not to whether the odds of metabolic disorders varied be based on milk yield until at least 168 DIM had according to concentrate DMI to total DMI ratio. been reached. Diagnoses made earlier than 14 DIM The third subset of the data included the lactations in were excluded from analyses in which the aspects of which the cow did not have access to summer feeding were risk factors, as opposed to outcomes, pasture between parturition and 42 DIM. This subset because we felt that post-partum feeding was unlike- of the data was used to study whether the odds of ly to be a major risk factor for disorders occurring so metabolic disorders varied according to the per- soon after calving. Finally, lactations were excluded centage of the total concentrate DMI that was fed if the data were not available for most of the weeks with roughages [concentrate DMI fed with between parturition and 168 DIM. The 3676 lacta- roughages 4 total concentrate DMI 3 100]. In tions remaining after these exclusions are described this way, it was possible to compare cows fed TMR in Table 1 and the disease diagnoses are described in with those fed some or all concentrates separately Table 2. from the roughages. To study whether the odds of disease varied In addition, a fourth and a fifth subset of the data, according to post-partum feeding, three subsets of based on feeding management, was created to ex- the data were created, based on feeding management. plore the effects of each metabolic disorder on week- The first subset of the data included only lactations specific feed intake. The fourth subset of the data in which all of the concentrates fed between parturi- included only lactations in which . 90 of concen- tion and 42 DIM were fed separately from trates fed between parturition and 168 DIM were fed roughages. This subset of the data was used to study separately from roughages. This subset of the data whether the odds of metabolic disorders varied was used to explore the effects of each metabolic according to total DMI of concentrates. The second disorder on week-specific concentrate DMI fed subset of the data included only lactations in which separately from roughages. The fifth subset of the Table 2 Frequency, lactational incidence and DIM for the first diagnoses of each study disease: data include 1698, 1013, and 965 lactations ,168 DIM from parities 1, 2, and .2, respectively 3 Danish dairy-research herds, 1985 to 1997 Study diseases a Decreased Enteritis Ketosis LDA rumen motility Frequency Parity 1 40 72 39 6 Parity 2 24 54 80 10 Parity .2 60 73 128 12 Total 124 199 247 28 Lactational incidence Parity 1 2.4 4.2 2.3 0.4 Parity 2 2.4 5.3 7.9 1.0 Parity .2 6.2 7.6 13.3 1.2 Total 3.4 5.4 6.7 0.8 DIM at diagnosis Median 25 22 25 17 b SIR 10 31 10 8 a LDA, left-displaced abomasum. b Semi-interquartile range is calculated as the half of the range between the 3rd and the 1st quartile of DIM. ¨ S . Østergaard, Y.T. Grohn Livestock Production Science 65 2000 107 –118 111 data included only data from weeks in which they and for the clustering of lactations by trial and by did not have access to summer pasture. This subset treatment group within trial. of the data was used to explore the effect of each Because there were four disorders and three metabolic disorder on week-specific total DMI. ‘types’ of feeding management, defining the first, The definition of the created subsets of the data second, and third subset of the data Table 3, the are summarised in Table 3, along with a clarification model was used for 12 different analyses. Within of the specific analyses that the data were applied to. each of the three subsets of the data, each lactation’s According to the criteria for each subset of the data, mean value, between parturition and 42 DIM for the each lactation may be included in one or more subset’s defining feeding characteristic, was calcu- subsets. lated. These mean values were then used to define the lactation as being within the lowest, middle, or highest tercile for the feeding characteristic. The 2.3. Statistical analyses: odds of disorders specific comparisons were lowest to middle tercile, lowest to highest, and middle to highest. Odds ratios The odds of disorders diagnosed between 14 and OR and 95 confidence intervals were calculated 168 DIM according to feeding characteristics were from the models. explored using this generalised linear mixed-model The specific fixed effects b offered to each GLMM analysis for binomial data: model, in addition to tercile of the feeding charac- teristic, were herd three categories; not random logit p 5 Xb 1 Zg 1 e Model 1 because there were only three, breed two categories; Jersey and not Jersey, calving season Where, p is a vector representing the response on a four categories, each of three months; winter5 logit scale ‘ln p 1 2 p’ of the expected chance to December–February, parity three categories ac- contract the metabolic disorder under study. b is a cording to parity 1, 2, and .2, and interaction vector of fixed effects being analyses as risk factors. between parity and tercile of the feeding characteris- g is an unknown vector of random effects distributed tic nine categories. Also, depending on the specific 2 2 N0, Is , in which s was the variance of the disorder being modelled, other ‘risk-factor’ disorders effects of treatment group nested within trial. In this yes no for each such risk factor were offered to the way, we accounted for the effects of the trials in model as fixed effects; these decisions were based ¨ which lactations were used in these research herds mainly on the findings of Østergaard and Grohn Table 3 Definition of the created subsets of the data and for which analyses each of them is used Subset Criterion for including records Number of Number of Analysis number lactations weekly recordings 1 All of the concentrates fed 0 to 498 Aggregated measure Effect of total concentrate 42 DIM were fed separately per lactation used DMI on disease from roughages 2 All of the total DMI was fed as 1282 as above Effect of concentrate a TMR and no access to summer DMI to total DMI pasture, both 0 to 42 DIM ratio on disease 3 No access to summer pasture 2864 as above Effect on disease of percentage 0 to 42 DIM of the total concentrate DMI that was fed with roughages 4 . 90 of concentrates fed 0 to 664 16 459 Effects of each disease on 168 DIM were fed separately week-specific concentrate DMI from roughages fed separately from roughages 5 No access to summer pasture 3673 73 422 Effect of each disease on in the current week week-specific total DMI ¨ 112 S . Østergaard, Y.T. Grohn Livestock Production Science 65 2000 107 –118 1999 regarding disease interrelationships within neous. The variation in repeated measures within these same 12 years of data. cows was accounted for by multiplying the error 2 We used the PQL procedure Breslow and variance s by the covariance matrix R, which was e Clayton, 1992 implemented in the SAS macro assumed to have first-order autoregressive covar- GLIMMIX Littell et al., 1998 version GLMM iance. 6.12 last updated 5th December 1997 to fit the Each model included several fixed effects, includ- models. Model selection was based on a backwards- ing those for herd, breed, and season as in model 1. elimination strategy, using the F-statistic as the Parity was only in the multiparous cow models of criterion at P ,0.05 two-tailed. Because we total DMI two categories according to parity 2 and thought that parity would be a significant effector of . 2 and the models of total concentrate DMI two disease incidence, parity was forced to remain within categories according to parity 1, 2, and .2. Stage all models. of lactation included nine categories according to week of lactation 0, 1, 2, 3–4, 5–6, 7–9, 10–13, 14–18, and 19–24. The indicator variable to de- 2.4. Statistical analyses: effects of disorders on scribe week of lactation, relative to the week of DMI diagnosis of the disorder also had nine categories. Category 0 represented cows free of the disorder. The analyses of the effects of disorders on total The other eight categories were for cows with the DMI were carried out separately for primiparous and metabolic disorder, and indicated whether that week multiparous cows, because of differences in shapes of data was from before 24, 23, 22, 21 or of the feed intake capacity curves and because there after 11, 12, 13, 4 the week of diagnosis. The were parity-specific differences in median DIM at day of diagnosis was the first day of week 11 in this ¨ diagnosis Østergaard and Grohn, 1999. However, coding. the analyses of the effect of disorders on total To fit model 2 we used the SAS MIXED pro- concentrate DMI were not carried out separately for cedure from SAS Institute 1996 with the restricted primiparous and multiparous cows. This was because maximum-likelihood method. Model selection pro- of concentrates being fed restrictively and separately, cedures were as already presented for the modelling consequently, smaller parity-specific differences of the odds of disorders model 1. occurred in total concentrate DMI. Separate analyses of separately fed concentrate DMI, primiparous total DMI and multiparous total DMI for each of the four

3. Results