Combining several techniques: speed genetics

P . Visscher et al. Livestock Production Science 65 2000 57 –70 65 1998 concluded that using crossbred information in sequence. Driven by human medicine, these tech- a poultry breeding programme was superior to using nologies are probably not far away, perhaps only 5 pureline information only if the ratio between domi- years or so. Surely the livestock industry will utilise nance variance and total genetic variance was ap- advances in such technologies, and should be pre- proximately 0.3 or higher. Note that the increasing pared to use the information which is generated by spread of A.I. in the pig also means that elite boars them. from the nucleus level would also have offspring at the commercial level, so their information would be 3.5. Genetic modification technologies available at the moment when their half sib groups in the nucleus level are to be selected. Although In this review, we have concentrated on reproduc- technology may already be available to implement tive and molecular technologies which do not alter such a structure, it is likely to need a massive the genome other than through the standard pro- investment in the infrastructure to allow data of cesses of selective breeding. The reason for not guaranteed quality to be retrieved from all levels of discussing transgenic or genetic modification tech- the breeding structure. nologies in great length is because it is unlikely, in our opinion, that these technologies will be used for 3.4. Genetic marker technology pig improvement in the next 5–10 years. This prediction is based both on technological and con- For some of the schemes suggested above, cheap sumer attitude arguments. In our opinion, genetically genomic information, for example in the form of a modified meat is not likely to be acceptable to the dense marker map, would be advantageous. Is this a consumer in the near future. The technological realistic scenario for the livestock industries? We problems and prospects were recently discussed by think it is, for a number of reasons. Firstly, the Pursel 1998, and are related to which genes to current marker technology of choice, i.e. microsatel- target, and how to control the expression of genes lite markers i.e., markers based on genetic variation which have been introduced. in the number of repeat sequences at a particular locus, is relative new since the late 1980s, and new technologies which could overtake them have been

4. Combining several techniques: speed genetics

developed and are being developed. In particular, in plant and some animal studies, amplified fragment The real impact of biotechnology will come from length polymorphisms AFLPs are now routinely combining new reproductive techniques with power- used to genotype individuals quickly with a battery ful molecular techniques. The former will allow a of markers. From studies in human and mouse, it rapid turnover of generations, whereas the latter can appears that the method of choice will soon be single provide selection which does not need phenotypic nucleotide polymorphisms SNPs. A polymorphic information when the selection decisions are made. marker is a locus at which different alleles are Georges and Massey 1991 suggested speeding present in the population, i.e. for which alleles are up genetic progress in cattle through ‘velogenetics’, segregating. A SNP is a marker at a particular DNA by harvesting oocytes from calves in utero, thereby nucleotide where different alleles are due to single reducing generation intervals substantially. Using base changes. The advantage of SNPs is the abun- markers in such a scheme, which could also be dance approximately one SNP every few hundred applied to pigs, would allow rapid selection based base pairs, so potentially millions of polymorphisms solely upon markers, for example in an introgression for the pig genome and the possibility for complete programme Fig. 4. One cycle of selection start with automation using DNA array technology. Moreover, the maturation of immature oocytes from suitable the technology is unlikely to stop with SNPs. Ulti- donors, followed by in vitro fertilisation. Implanta- mately we will be dealing with complete sequences tion of embryos is then carried out, using suitable of individuals, by automatically scoring only those recipients, for example those with large uterine polymorphisms which differ from some pre-defined capacities. As before, although we have used the 66 P . Visscher et al. Livestock Production Science 65 2000 57 –70 Fig. 4. Velogenetics using IVEP. Meishan as an example, suitable recipients could be gene introgression programmes for which no addi- from other sources e.g., improved white lines, tional phenotypic information is required. crosses between Chinese and European pigs. After If we allow ourselves to imagine that the technolo- the piglets are born, they can be selected immedi- gy will develop to a stage where cell differentiation ately using marker assisted selection, and immature can be controlled in vitro we can imagine that in oocytes can be harvested from the selected female vitro meiosis followed by fertilisation may become piglets. The duration of one cycle of selection of possible Fig. 6. Utilising this would allow for very such a rapid selection programme is about 4–5 rapid introgression, or with high-density marker months. The disadvantage is that the breeder has to maps and knowledge of marker–QTL associations, wait until the piglets are born before MAS is applied. more generalised selection objectives e.g., Haley It is assumed here that the loss of embryos would be and Visscher, 1998. For example, introgression of too great if MAS is attempted on the early embryos. fertility QTLs from exotic breeds could be performed The combination of MAS and such embryo tech- entirely in vitro, thereby reducing the total time of an nologies could be further enhanced by technologies introgression programme to months rather than currently under development, such as nuclear trans- years. fer Wilmut et al., 1997. In comparison to ‘stan- dard’ velogenetics, we can now apply marker as- sisted selection on a diploid cell line, after in vitro

5. Discussion and conclusions