Prof. Wayne A. Bennett Jr Dr. Paul Henry Barber Ms. Samantha H.T. Cheng Ms. Abril Iniguez-Rivas Ms. Allison L. Fritts-Penniman Mr. Eric Raymond Hester Mr. Eric Raymond Hester Ms. Victoria Millicent Hosford Mrs. Sara Elizabeth Simmonds Dr. Sean Andrew Crow

112 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 important that such research activities as outlined herein, incorporate elements of capacity building to ensure that lessons learnt from the research are passed on to future researchers and decision makers. Therefore this document outlines our proposed approach to increase capacity building activities through the provision of taught, experience and learning based opportunities.

64.1 Prof. Wayne A. Bennett Jr

Warga Negara : Amerika Serikat Jabatan : Professor Institusi : University of West Florida No. SIP : 213SIPFRPSMVI2013

64.2 Dr. David John Smith

Warga Negara : Inggris Jabatan : Senior Lecturer Institusi : Dept. of Biological Sciences, University of Essex No. SIP : 248SIPFRPSMVII2013

65. Systematics and diversiication of Conus in the Indo-West Paciic

Tujuan Penelitian : Mengonstruksi ilogeni genus Conus dengan pendekatan phylogenetic guna memahami keanekaragamannya Bidang Penelitain : Biologi Kelautan Daerah Penelitian : Maluku; Maluku Utara; Sumatera Barat; Bangka-Belitung dan Bali Lama Penelitian : 2 dua bulan mulai 12 Agustus 2013 Mitra Kerja : Lab Biomedik dan Molekuler Hewan - Fakultas Kedokteran Hewan - UNUD Dr. I Gusti Ngurah Mahardika 113 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 Cone snails within the genus Conus are a group of marine gastropods that display an impressive amount of species richness in the Indo-West Paciic and have been identiied as an exceptional radiation in the sea. Evolutionary relationships and diversiication dynamics of this group are not well understood due to poorly reined phylogenies. Therefore, I propose to collect samples from 1 Maluku, 2 North Maluku, 3 West Sumatera, 4 Bangka-Belitung, and 5 Bali over the course of 3 months to construct a phylogeny of this group. Then, I will use a comparative phylogenetic approach to understand how and when this staggering diversity evolved. All samples collected will be transported to Denpasar, Bali for genetic analyses.

65.1 Mr. Mark Anthony Phuong

Warga Negara : Amerika Serikat Jabatan : Graduate Student Institusi : University of California, Los Angeles No. SIP : 277SIPFRPSMVIII2013

66. Joint analysis of small-scale movement patterns of coral reef ishes”

Tujuan Penelitian : Memperoleh pemahaman yang lebih baik tentang hubungan antara species dengan habitatnya dan konektiitas fungsionalnya di bentang laut dengan menggunakan pendekatan terpadu menggunakan quantitative movement studies yang berbasis individual based modeling Bidang Penelitian : Biologi Kelautan Daerah Penelitian : Sulut P. Bangka Lama Penelitian : 3 tiga bulan mulai 22 Juli 2013 Mitra Kerja : Puslitbang Kelautan, Pantai dan Pulau-Pulau Kecil - UNHASProf. Ir. Jamaluddin Jompa 114 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 The major goal of this study is to better understand species-habitat relationships and functional connectivity in marine seascape by using an integrated approach which combines quantitative movement studies with individual-based modelling IBM. The spatially explicit, multi-species IBM will integrate key life history features of two ecologically and economically important reef ish species representing diferent functional groups and spatial representations of the environment habitat structure. The model will be used to study spatial dynamics of ish populations over time and the inluence of multi-frequency temporal constraints tidal dynamics and diel cycle on migration processes and habitat use patterns. It will capture the link between individual movement and population dynamics as well as the movement responses to changing seascape structures that afect individual performance and, in turn, population-level dynamics. Model-based analysis will therefore help to identify essential habitat properties for key species at speciic location and to anticipate responses to changing seascapes and new environmental conditions. Potential scenarios that will be investigated are habitat destruction and changes in resource use. Model results will thereby contribute to the development of both ecological theory about functional connectivity and spatial population dynamics as well as efective conservation strategies of MPAs. Due to the lack of detailed data for model parametrisation, a hydro-acoustic telemetry study will be conducted in North Sulawesi, Indonesia to quantify small- scale space use patterns of model species.

66.1 Ms. Maren Susanne Kruse

Warga Negara : Jerman Marine Jabatan : Biologist Researcher Institusi : Leibniz Center for Tropical Marine Ecology No. SIP : 268SIPFRPSMVII2013

67. Predators as livelihoods: options and ostacles for shark management in Eastern Indonesia

Tujuan Penelitian : Meneliti populasi hiu di Indonesia Timur dan mengkaji potensi serta tantangan untuk mempertahankan populasi tersebut secara berkelanjutan bersama para nelayan hiu 115 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 Bidang Penelitian : Biologi Kelautan Daerah Penelitian : NTT Kupang, Rote, Maluku Perairan P. Selaru, NTB Perairan Tanjung Luar, Lombok Lama Penelitian : 12 dua belas bulan mulai 1 Februari 2013 Mitra Kerja : Puslit Oseanograi LIPI - Dr. Augy Syahailatua Abstract The project aims to examine East Indonesian shark isheries and their signiicance to ishing communities. There are two main nodes of investigation: 1. Assess the shark populations in two East Indonesian ishing grounds see Slide 4 using a stereo baited remote underwater video BRUV technology and b ish market surveys to examine the size, species distribution and maturity of a representative number of sharks inside and outside a shark sanctuary Misool and a Marine Protected Area Kaimana. 2. Describe two or three representative shark ishing communities ishing in diferent areas e.g. Pulau Osi and Aru, including local knowledge and ecosystem awareness, ishing and resource management traditions, and the cultural and economic signiicance of shark ishing. This research will be carried out under the applicable Animal and Human Ethics Permits issued by Murdoch University, Perth and Research Permits issued by Kementarian Riset dan Teknologi Republik Indonesia RISTEK. Dr. Augy Syahailatua, Director at Lembaga Ilmu Pengetahuan Indonesia LIPI Labs in Ambon, has kindly ofered to act as the Indonesian counterpart for this research. The Bupati of Kaimana and the Kepala Dusun of Pulau Osi have also provided an assurance of support for this research.

67.1 Ms. Vanessa Flora Jaiteh

Warga Negara : Australia Jabatan : Ph.D. Student Institusi : Murdoch University No. SIP : 13EXTSIPFRPSMI2013 116 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013

68. Understanding biodiversity gradients through standardized sampling

Tujuan Penelitian : Mengusulkan penggunaan teknik-teknik yang baru dikembangkan untuk kepentingan sampling dan menghitung keanekaragaman hayati dan metode yang melibatkan sampling seluruh organisme yang menghuni koral-koral pacilopora mati Bidang Penelitian : Biologi Kelautan Daerah Penelitian : Sumatera Barat Kep. Mentawai, Padang, Jateng, Jabar, Kep. Riau Kep. Natuna Anambas, Bali, NTB, NTT Flores dan P. Komodo, Maluku Halmahera, Sulut Manado dan Bunaken, Sulteng, Sulsel, Sultra, Kaltim, dan Kalsel Lama Penelitian : 12 dua belas bulan mulai 4 Juni 2013 Mitra Kerja : Lab Biomedik dan Biologi Molekuler Hewan, Fakultas Kedokteran Hewan Universitas Udayana Dr. I Gusti Ngurah Kade Mahardika Abstract Overview: Indonesia is the global epicenter of marine biodiversity. While this pattern is well known, it is based on a small number of marine species, namely ish, corals and snails. It is not known whether these taxa that represent a small proportion of marine biodiversity are representative of other marine groups. It is also not well understood how biodiversity assembles into communities and how that assembly might be impacted by anthropogenic stressors like pollution, nitriication, or sedimentation. A major issue with addressing these questions, above, is the lack of standardized sampling techniques that limit regional and investigator biases that minimize comparability of data sets across space and time. This project proposes to use several standardized metrics to measure marine biodiversity on coral reefs at various taxonomic scales, including 1 viruses and microbes, 2 invertebrates and 3] vertebrates. By using standardized sampling methods across diferent taxonomic groups will result in a better understanding of the processes shaping Indonesian biodiversity patterns, community assembly and how marine biodiversity may be impacted by human activities. 117 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 Educational Framework: We do all of our research in Indonesia in a collaborative educational framework. All work will be based out of the Indonesian Biodiversity Research Center in collaboration with our oicial research sponsor, Dr. I Gusti Ngurah Mahardika from Udayana University and will be governed by MOUs and MTAs with LIPI and Udayana University. The Indonesian Biodiversity Research Center was developed out of our previous research and education eforts in Indonesia, supported by a 650,000 grant from USAID. Our proposed research activities will form the basis of 3 courses taught for Indonesian students and scientists from Diponegoro University UNDIP, Udayana University UNUD, the State University of Papua UNIPA, LIPI Oceanologi, and Conservation Intel-national Indonesia. These courses include 1 Scientiic Diving, 2 Marine Biodiversity Survey’s, and 3 Marine Ecology. Approximately 12-16 Indonesian students from UNUD, UNDIP, UNIPA, LIPI, KKP, and CI will participate in training activities each year. This project is scheduled to last for 5 years supported by NSF award OISIi 1243541. Additional educational activities will be supported by a new USAID gram Cooperative Agreement No. AID-497-A-00-10-00008, providing the opportunity for 4-6 students will have the opportunity to continue their training for periods of 3-4 months at UCLA andor the Smithsonian Institution in the United States over the course of this project.

68.1 Dr. Paul Henry Barber

Warga Negara : Amerika Serikat Jabatan : Professor Institusi : University of California, Los Angeles No. SIP : 185SIPFRPSMVI2013

68.2 Ms. Samantha H.T. Cheng

Warga Negara : Amerika Serikat Jabatan : Ph.D. Student Institusi : University of California, Los Angeles No. SIP : 218SIPFRPSMVI2013 118 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013

68.3 Ms. Abril Iniguez-Rivas

Warga Negara : Amerika Serikat Jabatan : Ph.D. Student Institusi : University of California, Los Angeles No. SIP : 219SIPFRPSMVI2013

68.4 Ms. Allison L. Fritts-Penniman

Warga Negara : Amerika Serikat Jabatan : Ph.D. Student Institusi : University of California, Los Angeles No. SIP : 220SIPFRPSMVI2013

68.5 Mr. Eric Raymond Hester

Warga Negara : Amerika Serikat Jabatan : Graduate Srudent Institusi : University of California, Los Angeles No. SIP : 221SIPFRPSMVI2013

68.6 Mr. Eric Raymond Hester

Warga Negara : Amerika Serikat Jabatan : Graduate Srudent Institusi : University of California, Los Angeles No. SIP : 222SIPFRPSMVI2013 119 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013

68.7 Ms. Victoria Millicent Hosford

Warga Negara : Amerika Serikat Jabatan : Graduate Student Institusi : San Diego State University No. SIP : 186SIPFRPSMVI2013

68.8 Mrs. Sara Elizabeth Simmonds

Warga Negara : Amerika Serikat Jabatan : Ph.D. Student Institusi : University of California, Los Angeles No. SIP : 187SIPFRPSMVI2013

68.9 Mr. Shang- Yin Liu

Warga Negara : Republik China Jabatan : Postdoktoral Researcher Institusi : Departement of Ecology and Evolutionary Biology, UCLA No. SIP : 272SIPFRPSMVII2013

69. Genetic Diversity of Plasmodium Vivax in the Indonesian Archipelago

Tujuan Penelitian : Memahami berbagai jenis parasit Malaria dan transmisinya serta mengidentiikasi jalur-jalur kunci penyebarannya antar daerah Bidang Penelitian : Biologi Molekuler Daerah Penelitian : DKI Jakarta The Eijkman Institute of Molecular Biology Lama Penelitian : tiga bulan mulai 16 September 2013 Mitra Kerja : Lembaga Biologi Eijkman Dr Rintis Noviyanti 120 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 Abstrak Malaria continues to pose a major public health burden in Indonesia, with Plasmodium falciparum and Plasmodium vivax presenting the greatest contribution to morbidity and mortality. Renewed eforts to contain P. vivax have been made in recent years due to increasing evidence of severe and life- threatening P. vivax infection, and rising levels of resistance to the widely used antimalarial drug chloroquine. A number of factors, however, including the early development of the transmissible gametocyte stages, the ability of the parasite to lie dormant in the liver for weeks to months, and the varying levels of malaria endemicity throughout the Indonesian Archipelago greatly challenge P. vivax elimination eforts in Indonesia. In eforts to achieve malaria elimination, it is essential to understand the variation in parasite diversity and transmission, and to identify the key routes of parasite spread across the region. This can be achieved through developing a population genetic metrics to deine various features of malaria transmission; an approach that has been supported by the Indonesian Ministry of Health decree No. 293 MENKESSKIV2009 on the importance of parasite genotyping for epidemiology surveillance in malaria elimination eforts. Through various study sites in Indonesia, Dr Rintis Noviyanti and her team at the Eijkman Institute of Molecular Biology have developed a microsatellite-based genotyping system and database resource for population genetic analyses of malaria parasites. This study will undertake genotyping of P. vivax isolates from several regions of Indonesia to assess the variation in parasite diversity and transmission dynamics between regions. In addition, the study will entail comparison of the diversity of infections from clinical and asymptomatic individuals with varying life cycle stages and parasite density to determine whether these groups present distinct parasite sup-populations with difering transmission dynamics. The results of this study will add to a detailed map of Plasmodium vivax diversity in the Indonesian archipelago. With appropriate molecular datasets on the parasite, the population genetic metrics at the Eijkman Institute can be used to deine various features of transmission at a local level, enabling optimization of strategic malaria control activities in Indonesia. 121 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013

69.1 Ms. Zuleima Pava Imitola

Warga Negara : Kolombia Jabatan : PhD student Institusi : Menzies School of Health Research No. SIP : 361SIPFRPSMIX2013

70. Research on mosquito-borne and blood-borne viral infectious

diseases in Indonesia Tujuan Penelitian : Melakukan penelitian epidemiologi sero- dan molekuler sebagai studi dasar yang diperlukan untuk mengetahui karakteristik virus yang dibawa oleh nyamuk dan darah Bidang Penelitian : Biologi Molekuler Daerah Penelitian : Jatim Surabaya Lama Penelitian : 12 dua belas bulan mulai 24 September 2013 Mitra Kerja : Lembaga Penyakit Tropis, Universitas Airlangga Prof. Dr. Nasronudin, dr., SpPD, K-PI, FINASIM Abstract Dengue hemorrhagic fever is a serious mosquito-borne infectious disease prevalent throughout tropical and subtropical areas of the world including Indonesia, and is caused by the infection with dengue virus. The recent distribution of the viruses in Indonesia has not been elucidated completely, and there would be a possibility of an appearance of highly pathogenic strains in the future. Thus, it is important to continue surveillance the viruses in Indonesia. In addition, HIVAIDS is a blood- borne viral disease prevalent all over the world, and is mainly caused by HIV-1 infection. Rapidly growing epidemic of HIV-1 is a serious public health problem in Indonesia. In order to control the HIV-1 epidemic, it is important to reveal the current prevalence rate and genotype of HIV-1 in Indonesia. The methodology is: i Isolate virus using culture cells from infected patients or wild mosquitoes Dengue and HIV; II Determine the nucleotide sequences, and perform genotypic analyses Dengue and H»V; iii Prepare monoclonal antibodies 122 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 against viral proteins HIV and Dengue, iv Study mutations associated with drug resistance HIV; V. Study viral plienotype and pathogenicity using isolated viruses HIV and Dengue HIV. Search natural compounds show antiviral efect HIV and Dengue.

70.1 Mr. Tomohiro Kotaki

Warga Negara : Jepang Jabatan : Research Assistant Institusi : Graduate School of Medicine, Kobe University No. SIP : 71EXTSIPFRPSMIX2013

71. Aluminium uptake in Symplocos trees and sustainable use of dye plants by Indonesian weavers

Tujuan Penelitian : Meneliti kondisi budidaya tanaman Bidang Penelitian : Biologi-Ekologi Daerah Penelitian : Kalimantan Sintang, Sulawesi Palu,Batuisi, Bali Seraya, Nusa Penida Tenglad, Flores Nangpanda, Watublapi, Ndona, Timor Dili Lama Penelitian : 6 enam bulan mulai 19 Agustus 2013 Mitra Kerja : Fakultas Pertanian, Universitas Tadulako Dr. Aiyen Tjoa Abstrak In order to develop concepts for sustainable use of Symplocos plants by Indonesian weavers, this project aims to investigate appropriate cultivation conditions and fundamental research underlying the mordant capacity of Symplocos. The goals are based on two previous indings: 1 very high levels of aluminium ] 1,000 ppm are accumulated in the above-ground tissue of Symplocos trees, and 2 the mordant capacity of Symplocos is highly associated with the aluminium concentration in its leaf and bark tissue. Fieldwork in Indonesia will be conducted 123 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 in collaboration with the “Threads of Life: Indonesian Textile Arts Center” and with colleagues from Todulako University Palu, Sulawesi and includes collection of plant material and quantiication of the aluminium content in plants growing at various locations e.g. Bali, Timor, Kalimantan, Flores, Sulawesi and diferent soil types. In addition, precise chemical analyses and determination of the optimal growing conditions for Symplocos will be conducted at Ulm University Germany.

71.1 Mr. Marco Schmitt

Warga Negara : Jerman Jabatan : Ph.D. Student Institusi : Institute for Systematic Botany and Ecology - Ulm University No. SIP : 305SIPFRPSMVIII2013

72. Biogeochemistry and Geomicrobiology of the Malili Lakes,

Indonesia Tujuan Penelitian : Mempelajari aspek-aspek mikrobiologis, geokimia, dan limnologi dari Danau-danau Malili Bidang Penelitian : Mikrobiologi Daerah Penelitian : Sulsel Danau-danau Malili Lama Penelitian : 2 dua bulan mulai 25 September 2013 Mitra Kerja : Puslit Limnologi LIPI Dr. Cynthia Henny dan tim Abstrak The proposed research will study several aspects of the biogeochemistry and geomicrobiology of the Malili Lakes, on Sulawesi Island. Our previous studies have identiied that the lakes possess unique chemical and physical properties and our goal is to understand how these properties inluence biogeochemistry and geomicrobiology and ultimately whole ecosystem functioning. Although the chemistry and physics of the Malili Lakes are unique on the planet today, they are 124 Sekretariat Perizinan Penelitian Asing Kementerian Riset dan Teknologi DIREKTORI PENELITIAN ASING DI INDONESIA 2013 analogous to what is known for the earth’s earliest oceans. Our understanding of ecological functioning in the Malili lakes may therefore yield insight into the Earths earliest marine ecosystems.

72.1 Dr. Sean Andrew Crowe

Warga Negara : Kanada Jabatan : Associate Professor Institusi : University of British Columbia No. SIP : 374SIPFRPSMIX2013

72.2 Mr. André Friese